Evidence map›Paper›PMID 31076459›Full record

ArticleRNA (New York, N.Y.)2019

Regulation of cyclic oligoadenylate synthesis by the

Mohamed Nasef, Mary C Muffly, Andrew B Beckman, Sebastian J Rowe, Forrest C Walker, Asma Hatoum-Aslan, Jack A Dunkle

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genetic Engineering of Therapeutic Phages Using Type III CRISPR-Cas Systems.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mohamed NasefDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35487, USA.
Mary C MufflyDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35487, USA.
Andrew B BeckmanDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35487, USA.
Sebastian J RoweDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35487, USA.
Forrest C WalkerDepartment of Biological Sciences, University of Alabama, Tuscaloosa, Alabama 35487, USA.
Asma Hatoum-AslanDepartment of Biological Sciences, University of Alabama, Tuscaloosa, Alabama 35487, USA.ORCID 0000-0003-2395-8900
Jack A DunkleDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35487, USA.ORCID 0000-0001-6252-0587
University of Alabama · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
Characterizing mechanisms of CRISPR-Cas10 control in a model Staphylococcus systemR15GM129671 · NIGMS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI HATOUM, ASMA · 2018 to 2018
$427k
NCI NIH HHS P30 CA013148NIGMS NIH HHS R15 GM129671
6 · The paper itself

Abstract

CRISPR-Cas systems are a class of adaptive immune systems in prokaryotes that use small CRISPR RNAs (crRNAs) in conjunction with CRISPR-associated (Cas) nucleases to recognize and degrade foreign nucleic acids. Recent studies have revealed that Type III CRISPR-Cas systems synthesize second messenger molecules previously unknown to exist in prokaryotes, cyclic oligoadenylates (cOA). These molecules activate the Csm6 nuclease to promote RNA degradation and may also coordinate additional cellular responses to foreign nucleic acids. Although cOA production has been reconstituted and characterized for a few bacterial and archaeal Type III systems, cOA generation and its regulation have not been explored for the

Indexed as

Adenine NucleotidesBacterial ProteinsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsCRISPR-Cas SystemsMagnesiumModels, MolecularOligoribonucleotidesPolymorphism, Single NucleotideRNA, BacterialSecond Messenger SystemsStaphylococcus epidermidis2',5'-oligoadenylateAdenine NucleotidesBacterial ProteinsCRISPR-Associated ProteinsMagnesiumOligoribonucleotidesRNA, BacterialCas10CRISPR-CascrRNAinterferenceoligoadenylate

Identifiers

PMID31076459
PMCPMC6633199
OpenAlexW2943943258

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.