Evidence map›Paper›PMID 31076212›Full record

ArticleAnnals of epidemiology2019

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study.

Francesco Beghini, Audrey Renson, Christine P Zolnik, Ludwig Geistlinger, Mykhaylo Usyk, Thomas U Moody, Lorna Thorpe, Jennifer B Dowd, Robert Burk, Nicola Segata and 2 more

Open access · greenAbstract read
In one paragraph

Article in Annals of epidemiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 39 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Oral microbiota and periodontitis severity among Hispanic adults.Frontiers in cellular and infection microbiology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Francesco BeghiniDepartment of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.
Audrey RensonDepartment of Epidemiology and Biostatistics, City University of New York (CUNY), Graduate School of Public Health and Health Policy, New York.
Christine P ZolnikDepartment of Pediatrics, Albert Einstein College of Medicine, Bronx, NY; Department of Biology, Long Island University, Brooklyn, NY.
Ludwig GeistlingerDepartment of Epidemiology and Biostatistics, City University of New York (CUNY), Graduate School of Public Health and Health Policy, New York; Institute for Implementation Science in Population Health, City University of New York, New York.
Mykhaylo UsykDepartment of Biology, Long Island University, Brooklyn, NY.
Thomas U MoodyDepartment of Biology, Long Island University, Brooklyn, NY.
Lorna ThorpeDivision of Epidemiology, Department of Population Health, New York University School of Medicine, New York.
Jennifer B DowdDepartment of Epidemiology and Biostatistics, City University of New York (CUNY), Graduate School of Public Health and Health Policy, New York; Department of Global Health and Social Medicine, King's College London, London, UK.
Robert BurkDepartment of Biology, Long Island University, Brooklyn, NY.
Nicola SegataDepartment of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.
Heidi E JonesDepartment of Epidemiology and Biostatistics, City University of New York (CUNY), Graduate School of Public Health and Health Policy, New York; Institute for Implementation Science in Population Health, City University of New York, New York. Electronic address: Heidi.Jones@sph.cuny.edu.
Levi WaldronDepartment of Epidemiology and Biostatistics, City University of New York (CUNY), Graduate School of Public Health and Health Policy, New York; Institute for Implementation Science in Population Health, City University of New York, New York.
The Graduate Center, CUNY · USLong Island University · USUniversity of Trento · ITAlbert Einstein College of Medicine · USCity University of New York · USNew York University · US

Funding

Cancer Genomics:Integrative and Scalable Solutions in R / BioconductorU24CA180996 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MORGAN, MARTIN T, WALDRON, LEVI · 2014 to 2023
$6.9M
The representative microbiome: social determinants and tools for population researchR21AI121784 · NIAID · GRADUATE SCHOOL OF PUBLIC HEALTH AND HEALTH POLICY · PI DOWD, JENNIFER BEAM · 2016 to 2017
$446k
NCI NIH HHS U24 CA180996NIAID NIH HHS R21 AI121784
6 · The paper itself

Abstract

purposeThe effect of tobacco exposure on the oral microbiome has not been established.

methodsWe performed amplicon sequencing of the 16S ribosomal RNA gene V4 variable region to estimate bacterial community characteristics in 259 oral rinse samples, selected based on self-reported smoking and serum cotinine levels, from the 2013-2014 New York City Health and Nutrition Examination Study. We identified differentially abundant operational taxonomic units (OTUs) by primary and secondhand tobacco exposure, and used "microbe set enrichment analysis" to assess shifts in microbial oxygen utilization.

resultsCigarette smoking was associated with depletion of aerobic OTUs (Enrichment Score test statistic ES = -0.75, P = .002) with a minority (29%) of aerobic OTUs enriched in current smokers compared with never smokers. Consistent shifts in the microbiota were observed for current cigarette smokers as for nonsmokers with secondhand exposure as measured by serum cotinine levels. Differential abundance findings were similar in crude and adjusted analyses.

conclusionsResults support a plausible link between tobacco exposure and shifts in the oral microbiome at the population level through three lines of evidence: (1) a shift in microbiota oxygen utilization associated with primary tobacco smoke exposure; (2) consistency of abundance fold changes associated with current smoking and shifts along the gradient of secondhand smoke exposure among nonsmokers; and (3) consistency after adjusting for a priori hypothesized confounders.

Indexed as

MicrobiotaAdultBiomarkersCotinineFemaleHumansMaleMouthNew York CityRNA, Ribosomal, 16SSalivaTobacco Smoke PollutionTobacco SmokingBiomarkersCotinineRNA, Ribosomal, 16STobacco Smoke Pollution16SHuman microbiomeMicrobiotaOral healthRibosomalRNASmokingTobacco

Identifiers

PMID31076212
PMCPMC6548637
OpenAlexW2953116118

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.