Evidence map›Paper›PMID 31075103›Full record

ArticlePLoS genetics2019

Regulation of bacterial surface attachment by a network of sensory transduction proteins.

Leila M Reyes Ruiz, Aretha Fiebig, Sean Crosson

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. A co-conserved gene pair supportsJournal of bacteriology · 2025
    Article
  3. A co-conserved gene pair supportsbioRxiv : the preprint server for biology · 2025
    Article
  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Leila M Reyes RuizCommittee on Genetics, Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0002-8286-7219
Aretha FiebigDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois United States of America.ORCID 0000-0002-0612-5029
Sean CrossonCommittee on Genetics, Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0002-1727-322X
University of Chicago · US

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
UNIVERSITY OF CHICAGO PREPR25GM066522 · NIGMS · UNIVERSITY OF CHICAGO · PI CARRILLO, ROBERT ARNULFO, RANDALL, GLENN C · 2004 to 2024
$6.7M
Intergrated control of Caulobacter cell physiology by visible light and stressR01GM087353 · NIGMS · UNIVERSITY OF CHICAGO · PI CROSSON, SEAN · 2009 to 2018
$2.8M
NIGMS NIH HHS R01 GM087353NIGMS NIH HHS R25 GM066522NIGMS NIH HHS T32 GM007183
6 · The paper itself

Abstract

Bacteria are often attached to surfaces in natural ecosystems. A surface-associated lifestyle can have advantages, but shifts in the physiochemical state of the environment may result in conditions in which attachment has a negative fitness impact. Therefore, bacteria employ numerous mechanisms to control the transition from an unattached to a sessile state. The Caulobacter crescentus protein HfiA is a potent developmental inhibitor of the secreted polysaccharide adhesin known as the holdfast, which enables permanent attachment to surfaces. Multiple environmental cues influence expression of hfiA, but mechanisms of hfiA regulation remain largely undefined. Through a forward genetic selection, we have discovered a multi-gene network encoding a suite of two-component system (TCS) proteins and transcription factors that coordinately control hfiA transcription, holdfast development and surface adhesion. The hybrid HWE-family histidine kinase, SkaH, is central among these regulators and forms heteromeric complexes with the kinases, LovK and SpdS. The response regulator SpdR indirectly inhibits hfiA expression by activating two XRE-family transcription factors that directly bind the hfiA promoter to repress its transcription. This study provides evidence for a model in which a consortium of environmental sensors and transcriptional regulators integrate environmental cues at the hfiA promoter to control the attachment decision.

Indexed as

Gene Expression Regulation, BacterialGene Regulatory NetworksAdhesins, BacterialBacterial AdhesionCaulobacter crescentusEcosystemEnvironmentGene-Environment InteractionHistidine KinasePolysaccharides, BacterialPromoter Regions, GeneticProtein BindingSignal TransductionTranscription FactorsTranscription, GeneticAdhesins, Bacterialbacterial adhesins, polysaccharideHistidine KinasePolysaccharides, BacterialTranscription Factors

Identifiers

PMID31075103
PMCPMC6530869
OpenAlexW2915066497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.