Evidence map›Paper›PMID 31074977›Full record

ArticleBiochemistry2019

Structural, Kinetic, and Mechanistic Analysis of an Asymmetric 4-Oxalocrotonate Tautomerase Trimer.

Bert-Jan Baas, Brenda P Medellin, Jake A LeVieux, Marieke de Ruijter, Yan Jessie Zhang, Shoshana D Brown, Eyal Akiva, Patricia C Babbitt, Christian P Whitman

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. From duplication to fusion: Expanding Dayhoff's model of protein evolution.Protein science : a publication of the Protein Society · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Bert-Jan Baas
Brenda P Medellin
Jake A LeVieux
Marieke de Ruijter
Shoshana D Brown
Eyal Akiva
Patricia C Babbitt
Christian P WhitmanORCID 0000-0002-8231-2483
The University of Texas at Austin · USUniversity of California, San Francisco · USQB3 · US

Funding

Laying the Foundation of Genomic EnzymologyR01GM060595 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BABBITT, PATRICIA CLEMENT · 2000 to 2018
$5.4M
ENZYMES OF THE META-FISSION PATHWAYR01GM041239 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI WHITMAN, CHRISTIAN P. · 1995 to 2017
$3.0M
Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Structure and Mechanism in the Tautomerase SuperfamilyR01GM065324 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI WHITMAN, CHRISTIAN P. · 2002 to 2011
$2.3M
Structure-Function Relationships in the Tautomerase SuperfamilyR01GM129331 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI WHITMAN, CHRISTIAN P. · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM041239NIGMS NIH HHS R01 GM060595NIGMS NIH HHS R01 GM065324NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R01 GM129331
6 · The paper itself

Abstract

A 4-oxalocrotonate tautomerase (4-OT) trimer has been isolated from Burkholderia lata, and a kinetic, mechanistic, and structural analysis has been performed. The enzyme is the third described oligomer state for 4-OT along with a homo- and heterohexamer. The 4-OT trimer is part of a small subset of sequences (133 sequences) within the 4-OT subgroup of the tautomerase superfamily (TSF). The TSF has two distinct features: members are composed of a single β-α-β unit (homo- and heterohexamer) or two consecutively joined β-α-β units (trimer) and generally have a catalytic amino-terminal proline. The enzyme, designated as fused 4-OT, functions as a 4-OT where the active site groups (Pro-1, Arg-39, Arg-76, Phe-115, Arg-127) mirror those in the canonical 4-OT from Pseudomonas putida mt-2. Inactivation by 2-oxo-3-pentynoate suggests that Pro-1 of fused 4-OT has a low p K

Indexed as

Amino Acid SequenceBacterial ProteinsBurkholderiaCatalytic DomainFatty Acids, UnsaturatedIsomerasesKineticsModels, ChemicalMutationProtein Structure, QuaternaryPseudomonas putidaSequence Alignment2-oxo-3-pentynoic acid4-oxalocrotonate tautomeraseBacterial ProteinsFatty Acids, UnsaturatedIsomerases

Identifiers

PMID31074977
PMCPMC6948721
OpenAlexW2944232128

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.