Evidence map›Paper›PMID 31073965›Full record

ArticleJournal of neuro-oncology2019

Gliosarcoma: distinct molecular pathways and genomic alterations identified by DNA copy number/SNP microarray analysis.

Lindsey Lowder, Jennifer Hauenstein, Ashley Woods, Hsiao-Rong Chen, Manali Rupji, Jeanne Kowalski, Jeffrey J Olson, Debra Saxe, Matthew Schniederjan, Stewart Neill and 2 more

Abstract read
In one paragraph

Article in Journal of neuro-oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
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  7. Sporadic and Lynch syndrome-associated mismatch repair-deficient brain tumors.Laboratory investigation; a journal of technical methods and pathology · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Cancers · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Lindsey LowderDepartment of Pathology & Laboratory Medicine, Emory University Hospital, H185D, 1364 Clifton Road, NE, Atlanta, GA, 30322, USA. lolowde@emory.edu.ORCID http://orcid.org/0000-0002-1195-0517
Jennifer HauensteinDepartment of Oncology Cytogenetics, Emory University Hospital, F143A, 1364 Clifton Rd. NE, Atlanta, GA, 30322, USA.
Ashley WoodsDepartment of Hematology/Oncology, Winship Cancer Institute, 1365 Clifton Rd. NE, Atlanta, GA, 30322, USA.
Hsiao-Rong ChenBioinformatics & Biostatistics, Winship Cancer Institute, 1365 Clifton Rd. NE, Atlanta, GA, 30322, USA.
Manali RupjiBioinformatics & Biostatistics, Winship Cancer Institute, 1365 Clifton Rd. NE, Atlanta, GA, 30322, USA.ORCID http://orcid.org/0000-0002-0520-1624
Jeanne KowalskiDepartment of Oncology, Dell Medical School, LIVESTRONG Cancer Institutes, The University of Texas At Austin, 1601 Trinity St., Bldg. B, Stop Z1100, Austin, TX, 78712, USA.
Jeffrey J OlsonDepartment of Neurosurgery, Winship Cancer Institute, Emory University, 1365 Clifton Rd. NE, Atlanta, GA, 30322, USA.
Debra SaxeDepartment of Oncology Cytogenetics, Emory University Hospital, 1364 Clifton Rd. NE, Atlanta, GA, 143A, USA.
Matthew SchniederjanDepartment of Pathology & Laboratory Medicine, Children's Healthcare of Atlanta, Emory University Hospital, H185D, 1364 Clifton Road, NE, Atlanta, GA, 30322, USA.
Stewart NeillDepartment of Pathology & Laboratory Medicine, Emory University Hospital, H185D, 1364 Clifton Road, NE, Atlanta, GA, 30322, USA.
Brent WeinbergDepartment of Neuroradiology, Emory University Hospital, BG20, 1364 Clifton Road, NE, Atlanta, GA, 30322, USA.
Soma SenguptaDepartments Neurology, Hematology & Medical Oncology, Winship Cancer Institute, Emory University, 1365 Clifton Rd. NE, Atlanta, GA, 30322, USA.

Funding

Winship Cancer Institute Cancer Center Support GrantP30CA138292 · NCI · EMORY UNIVERSITY · PI Suresh S Ramalingam · 2009 to 2026
$47.5M
Elucidating Signaling Pathways for GABA-A Receptor Alpha5 in an Aggressive Subtype of MedulloblastomasK08NS083626 · NINDS · EMORY UNIVERSITY · PI SENGUPTA, SOMA · 2014 to 2018
$741k
NCI NIH HHS P30 CA138292NINDS NIH HHS K08 NS083626NINDS NIH HHS NS083626
6 · The paper itself

Abstract

purposeGliosarcoma is a histologic variant of glioblastoma (GBM), and like GBM carries a poor prognosis. Median survival is less than one (1) year with less than 5% of patients alive after 5 years. Although there is no cure, standard treatment includes surgery, radiation and chemotherapy. While very similar to GBM, gliosarcoma exhibits several distinct differences, morphologically and molecularly. Therefore, we report a comprehensive analysis of DNA copy number changes in gliosarcoma using a cytogenomic DNA copy number (CN) microarray (OncoScan

methodsCytogenomic DNA copy number microarray (OncoScan

resultsThe most frequent alteration was copy number loss, comprising 57% of total copy number changes. The number of losses far exceeded the number of amplifications (***, < 0.001) and loss of heterozygosity events (***, < 0.001). Amplifications were infrequent (4.6%), particularly for EGFR. Chromosomes 9 and 10 had the highest number of losses; a large portion of which correlated to CDKN2A/B loss. Copy number gains were the second most common alteration (26.2%), with the majority occurring on chromosome 7. MetaCore™ enrichment detected notable pathways for copy number gains including: HOXA, Rho family of GTPases, and EGFR; copy number loss including: WNT, NF-kß, and CDKN2A; and copy number loss of heterozygosity including: WNT and p53.

conclusionsThe pathways and copy number alterations detected in this study may represent key drivers in gliosarcoma oncogenesis and may provide a starting point toward targeted oncologic analysis with therapeutic potential.

Indexed as

DNA Copy Number VariationsPolymorphism, Single NucleotideSignal TransductionAdultAgedBiomarkers, TumorFemaleFollow-Up StudiesGenomicsGliosarcomaHumansMaleMiddle AgedNeoplasm Recurrence, LocalOligonucleotide Array Sequence AnalysisPrognosisBiomarkers, TumorEGFRGlioblastomaGliomaGliosarcomaMicroarrayOncoscan

Identifiers

PMID31073965
PMCPMC6591191

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.