Evidence map›Paper›PMID 31072500›Full record

ArticleMethods in enzymology2019

Physical methods for studying flavoprotein photoreceptors.

Estella F Yee, Siddarth Chandrasekaran, Changfan Lin, Brian R Crane

Abstract read
In one paragraph

Article in Methods in enzymology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Estella F YeeDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, United States.
Siddarth ChandrasekaranDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, United States.
Changfan LinDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, United States.
Brian R CraneDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, United States. Electronic address: bc69@cornell.edu.

Funding

TR&D 4 for ACERT, 2017-2021 funding periodP41GM103521 · NIGMS · CORNELL UNIVERSITY · PI FREED, JACK H · 2012 to 2021
$11.7M
Molecular Mechanisms of Signal Transduction Involving Light, Redox and Transmembrane ComplexesR35GM122535 · NIGMS · CORNELL UNIVERSITY · PI BRIAN R CRANE · 2017 to 2026
$7.1M
The Structure and Function of the Bacterial ChemosomeR01GM066775 · NIGMS · CORNELL UNIVERSITY ITHACA · PI CRANE, BRIAN R · 2003 to 2016
$4.3M
NIGMS NIH HHS P41 GM103521NIGMS NIH HHS R01 GM066775NIGMS NIH HHS R35 GM122535
6 · The paper itself

Abstract

Molecular mechanisms of dark-to-light state transitions in flavoprotein photoreceptors have been the subject of intense investigation. Blue-light sensing flavoproteins fall into three general classes that share aspects of their activation processes: LOV domains, BLUF proteins, and cryptochromes. In all cases, light-induced changes in flavin redox, protonation, and bonding states result in hydrogen-bond and conformational rearrangements important for regulation of downstream targets. Physical characterization of these flavoprotein states can provide valuable insights into biological function, but clear conclusions are often challenging to draw owing to complexities of data collection and interpretation. In this chapter, we briefly review the three classes of flavoprotein photoreceptors and provide methods for their recombinant production, reconstitution with flavin cofactor, and characterization. We then relate best practices and special considerations for the application of several types of spectroscopies, redox potential measurements, and X-ray scattering experiments to photosensitive flavoproteins. The methods presented are generally accessible to most laboratories.

Indexed as

CryptochromesCrystallography, X-RayEscherichia coli ProteinsFlavinsPhosphoric Diester HydrolasesProtein Structure, TertiaryScattering, RadiationbluF protein, E coliCryptochromesEscherichia coli ProteinsFlavinsPhosphoric Diester HydrolasesCrystallographyEPR spectroscopyProtein purificationVisible spectroscopyX-ray scattering

Identifiers

PMID31072500
PMCPMC6512857

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.