Evidence map›Paper›PMID 31072335›Full record

ArticleBMC plant biology2019

Genome-wide identification, characterization, and expression patterns of the BZR transcription factor family in sugar beet (Beta vulgaris L.).

Wei Wang, Ya-Qing Sun, Guo-Long Li, Shao-Ying Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

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  19. Genome-Wide Identification of the Vacuolar HPlants (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Wei WangSugar Beet Physiological Research Institute, Inner Mongolia Agricultural University, Hohhot, China.
Ya-Qing SunSugar Beet Physiological Research Institute, Inner Mongolia Agricultural University, Hohhot, China.
Guo-Long LiSugar Beet Physiological Research Institute, Inner Mongolia Agricultural University, Hohhot, China.
Shao-Ying ZhangSugar Beet Physiological Research Institute, Inner Mongolia Agricultural University, Hohhot, China. syzh36@aliyun.com.
Inner Mongolia Agricultural University · CN

Funding

Agriculture Research System of China CARS-170201National Natural Science Foundation of China 31760416
6 · The paper itself

Abstract

backgroundBRASSINAZOLE-RESISTANT (BZR) family genes encode plant-specific transcription factors (TFs) that participate in brassinosteroid signal transduction. BZR TFs have vital roles in plant growth, including cell elongation. However, little is known about BZR genes in sugar beet (Beta vulgaris L.).

resultsTherefore, we performed a genome-wide investigation of BvBZR genes in sugar beet. Through an analysis of the BES1_N conserved domain, six BvBZR gene family members were identified in the sugar beet genome, which clustered into three subgroups according to a phylogenetic analysis. Each clade was well defined by the conserved motifs, implying that close genetic relationships could be identified among the members of each subfamily. According to chromosomal distribution mapping, 2, 1, 1, 1, and 1 genes were located on chromosomes 1, 4, 5, 6, and 8, respectively. The cis-acting elements related to taproot growth were randomly distributed in the promoter sequences of the BvBZR genes. Tissue-specific expression analyses indicated that all BvBZR genes were expressed in all three major tissue types (roots, stems, and leaves), with significantly higher expression in leaves. Subcellular localization analysis revealed that Bv1_fxre and Bv6_nyuw are localized in the nuclei, consistent with the prediction of Wolf PSORT.

conclusionThese findings offer a basis to predict the functions of BZR genes in sugar beet, and lay a foundation for further research of the biological functions of BZR genes in sugar beet.

Indexed as

Gene Expression Regulation, PlantGenome, PlantAmino Acid MotifsBeta vulgarisChromosomes, PlantConserved SequenceGenes, PlantGreen Fluorescent ProteinsNucleotide MotifsPhylogenyPlant Growth RegulatorsPlant RootsPromoter Regions, GeneticTranscription FactorsGreen Fluorescent ProteinsPlant Growth RegulatorsTranscription FactorsBZR transcription factorExpression patternGenome-wide analysisSugar beetTaproot development

Identifiers

PMID31072335
PMCPMC6506937
OpenAlexW2947329464

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.