Evidence map›Paper›PMID 31072326›Full record

ArticleBMC genomics2019

Cadmium-induced genome-wide DNA methylation changes in growth and oxidative metabolism in Drosophila melanogaster.

De-Long Guan, Rui-Rui Ding, Xiao-Yu Hu, Xing-Ran Yang, Sheng-Quan Xu, Wei Gu, Min Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. DNA Methylation Machinery in Gastropod Mollusks.Life (Basel, Switzerland) · 2024
    Review
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  6. Curative Potential of Substances with Bioactive Properties to Alleviate Cd Toxicity: A Review.International journal of environmental research and public health · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

De-Long GuanCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710062, Shaanxi, China.
Rui-Rui DingCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710062, Shaanxi, China.
Xiao-Yu HuCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710062, Shaanxi, China.
Xing-Ran YangCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710062, Shaanxi, China.
Sheng-Quan XuCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710062, Shaanxi, China.
Wei GuCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710062, Shaanxi, China.
Min ZhangCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710062, Shaanxi, China. zhangmin451@snnu.edu.cn.
Shaanxi Normal University · CN

Funding

Fundamental Research Funds for the Central Universities GK201703040Natural Science Foundation of Shaanxi Province 2017JM3032the Excellent Doctor Innovation Project of Shaanxi Normal University S2015YB03
6 · The paper itself

Abstract

backgroundCadmium (Cd)-containing chemicals can cause serious damage to biological systems. In animals and plants, Cd exposure can lead to metabolic disorders or death. However, for the most part the effects of Cd on specific biological processes are not known. DNA methylation is an important mechanism for the regulation of gene expression. In this study we examined the effects of Cd exposure on global DNA methylation in a living organism by whole-genome bisulfite sequencing (WGBS) using Drosophila melanogaster as model.

resultsA total of 71 differentially methylated regions and 63 differentially methylated genes (DMGs) were identified by WGBS. A total of 39 genes were demethylated in the Cd treatment group but not in the control group, whereas 24 showed increased methylation in the former relative to the latter. In most cases, demethylation activated gene expression: genes such as Cdc42 and Mekk1 were upregulated as a result of demethylation. There were 37 DMGs that overlapped with differentially expressed genes from the digital expression library including baz, Act5C, and ss, which are associated with development, reproduction, and energy metabolism.

conclusionsDNA methylation actively regulates the physiological response to heavy metal stress in Drosophila in part via activation of apoptosis.

Indexed as

DNA MethylationGene Expression RegulationGenomeOxidative StressAnimalsCadmiumDrosophila melanogasterFemaleGenomicsSulfitesWhole Genome SequencingCadmiumhydrogen sulfiteSulfites

Identifiers

PMID31072326
PMCPMC6507226
OpenAlexW2946851191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.