ArticleBMC genomics2019
Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.
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Who cites it
25 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Integrated meta-analysis and transcriptomics pinpoint genomic loci and novel candidate genes associated with submergence tolerance in rice.BMC genomics · 2024Pooled it
- Article
- Study on Rice Submergence Germination Through the Combination of RNA-Seq and Genome Resequencing Strategies.Plants (Basel, Switzerland) · 2025Article
- GWAS and haplotype analysis reveal the intricate interplay of hormones in rice seed germination under hypoxic conditions.3 Biotech · 2025Article
- Different nontarget-site mechanisms underlie resistance to dicamba and 2,4-D in an Amaranthus tuberculatus population.Pest management science · 2025Article
- GWAS Combined with Meta-Analysis Identifies OsDREB6 as a Regulator of Coleoptile Elongation Under Anaerobic Conditions in Rice.Rice (New York, N.Y.) · 2025Article
- Identification of Submergence Tolerance Loci in Dongxiang Wild Rice (DXWR) by Genetic Linkage and Transcriptome Analyses.International journal of molecular sciences · 2025Article
- Understanding anaerobic germination in direct-seeded rice: a genomic mapping approach.BMC plant biology · 2024Article
- Genetic factors underlying anaerobic germination in rice: Genome-wide association study and transcriptomic analysis.The plant genome · 2024Article
- Identification of hub genes and key pathways in arsenic-treated rice (Oryza sativa L.) based on 9 topological analysis methods of CytoHubba.Environmental health and preventive medicine · 2024Article
- GWAS Combined with WGCNA of Transcriptome and Metabolome to Excavate Key Candidate Genes for Rice Anaerobic Germination.Rice (New York, N.Y.) · 2023Article
- Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress.BMC genomics · 2023Article
- Flooding tolerance in Rice: adaptive mechanism and marker-assisted selection breeding approaches.Molecular biology reports · 2023Review
- Genome-wide association study reveals novel genetic loci involved in anaerobic germination tolerance inMolecular breeding : new strategies in plant improvement · 2023Article
- Genomic landscape of theFrontiers in plant science · 2023Article
- Genome-wide association analysis for emergence of deeply sown rice (Frontiers in plant science · 2023Article
- Integrating linkage mapping and comparative transcriptome analysis for discovering candidate genes associated with salt tolerance in rice.Frontiers in plant science · 2023Article
- Mapping QTLs for anaerobic tolerance at germination and bud stages using new high density genetic map of rice.Frontiers in plant science · 2022Article
- High-density genetic mapping identified QTLs for anaerobic germination tolerance in rice.Frontiers in plant science · 2022Article
- Using a high density bin map to analyze quantitative trait locis of germination ability of maize at low temperatures.Frontiers in plant science · 2022Article
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11 authors.
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Abstract
backgroundAnaerobic germination tolerance is an important trait for direct-seeded rice varieties. Understanding the genetic basis of anaerobic germination is a key for breeding direct-seeded rice varieties.
resultsIn this study, a recombinant inbred line (RIL) population derived from a cross between YZX and 02428 exhibited obvious coleoptile phenotypic differences. Mapping analysis using a high-density bin map indicated that a total of 25 loci were detected across two cropping seasons, including 10 previously detected loci and a total of 13 stable loci. Analysis of the 13 stable loci demonstrated that the more elite alleles that were pyramided in an individual, the higher the values of these traits were in the two cropping seasons. Furthermore, some anaerobic germination-tolerant recombinant inbred lines, namely G9, G10, G16, and G151, were identified. A total of 84 differentially expressed genes were obtained from the 13 stable loci via genome-wide expression analysis of the two parents at three key periods. Among them, Os06g0110200, Os07g0638300, Os07g0638400, Os09g0532900, Os09g0531701 and Os12g0539751 constitute the best candidates associated with anaerobic germination.
conclusionsBoth the anaerobic germination-tolerant recombinant inbred lines and the loci identified in this study will provide new genetic resources for improving the anaerobic germination tolerance of rice using molecular breeding strategies, as well as will broaden our understanding of the genetic control of germination tolerance under anaerobic conditions.
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