Evidence map›Paper›PMID 31071195›Full record

ArticlePLoS pathogens2019

Multi-omics characterization of the necrotrophic mycoparasite Saccharomycopsis schoenii.

Klara Junker, Anna Chailyan, Ana Hesselbart, Jochen Forster, Jürgen Wendland

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Journal of fungi (Basel, Switzerland) · 2026
    Review
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  6. Ancient origin and high diversity of zymocin-like killer toxins in the budding yeast subphylum.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
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  10. Investigation of the Microbial Diversity in theJournal of fungi (Basel, Switzerland) · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Frontiers in microbiology · 2021
    Article
  15. Biocontrol yeasts: mechanisms and applications.World journal of microbiology & biotechnology · 2019
    Review
  16. Overexpression ofMicroorganisms · 2019
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Klara JunkerYeast & Fermentation, Carlsberg Research Laboratory, Copenhagen, Denmark.ORCID 0000-0003-1124-2729
Anna ChailyanYeast & Fermentation, Carlsberg Research Laboratory, Copenhagen, Denmark.ORCID 0000-0002-1661-3288
Ana HesselbartYeast & Fermentation, Carlsberg Research Laboratory, Copenhagen, Denmark.ORCID 0000-0001-6307-5307
Jochen ForsterYeast & Fermentation, Carlsberg Research Laboratory, Copenhagen, Denmark.
Jürgen WendlandYeast & Fermentation, Carlsberg Research Laboratory, Copenhagen, Denmark.ORCID 0000-0001-8350-253X
Carlsberg Laboratory · DKVrije Universiteit Brussel · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pathogenic yeasts and fungi are an increasing global healthcare burden, but discovery of novel antifungal agents is slow. The mycoparasitic yeast Saccharomycopsis schoenii was recently demonstrated to be able to kill the emerging multi-drug resistant yeast pathogen Candida auris. However, the molecular mechanisms involved in the predatory activity of S. schoenii have not been explored. To this end, we de novo sequenced, assembled and annotated a draft genome of S. schoenii. Using proteomics, we confirmed that Saccharomycopsis yeasts have reassigned the CTG codon and translate CTG into serine instead of leucine. Further, we confirmed an absence of all genes from the sulfate assimilation pathway in the genome of S. schoenii, and detected the expansion of several gene families, including aspartic proteases. Using Saccharomyces cerevisiae as a model prey cell, we honed in on the timing and nutritional conditions under which S. schoenii kills prey cells. We found that a general nutrition limitation, not a specific methionine deficiency, triggered predatory activity. Nevertheless, by means of genome-wide transcriptome analysis we observed dramatic responses to methionine deprivation, which were alleviated when S. cerevisiae was available as prey, and therefore postulate that S. schoenii acquired methionine from its prey cells. During predation, both proteomic and transcriptomic analyses revealed that S. schoenii highly upregulated and translated aspartic protease genes, probably used to break down prey cell walls. With these fundamental insights into the predatory behavior of S. schoenii, we open up for further exploitation of this yeast as a biocontrol yeast and/or source for novel antifungal agents.

Indexed as

Genome, FungalTranscriptomeAnimalsFungal ProteinsGene Expression ProfilingHigh-Throughput Nucleotide SequencingMethioninePredatory BehaviorProteomeSaccharomyces cerevisiaeSaccharomycopsisFungal ProteinsMethionineProteome

Identifiers

PMID31071195
PMCPMC6508603
OpenAlexW2944706770

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.