ArticlePloS one2019
Complete chloroplast genome of Camellia japonica genome structures, comparative and phylogenetic analysis.
Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.
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58 citing papers in PubMed.
- Comparative chloroplast genome analysis reveals genetic differentiation and maternal introgression in tea plants (Camellia sinensis) from Shaoyang, China.BMC plant biology · 2026Article
- The complete chloroplast genome sequence of Typhonium flagelliforme, an anti-cancer medicinal plant: genome structure, comparative and phylogenetic relationship analysis within Araceae.Functional & integrative genomics · 2026Article
- Insights into the plastome evolution and phylogenetic relationships of Lepidium (Brassicaceae).BMC plant biology · 2025Article
- Comparative analysis of chloroplast genomes within Saxifraga sect. Ciliatae: insights into their adaptation to the alpine environment.BMC plant biology · 2025Article
- The Complete Chloroplast Genome ofGenes · 2025Article
- Nine complete chloroplast genomes of the Camellia genus provide insights into evolutionary relationships and species differentiation.Scientific reports · 2025Article
- Comparative chloroplast genomes and phylogenetic analyses shed new insights on the phyloevolution of different ploidy in Camellia reticulata.BMC plant biology · 2025Article
- Complete sequencing of the mitochondrial genome of tea plantFrontiers in plant science · 2025Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2025Article
- Comprehensive Analysis of the Fourteen Complete Genome Sequences ofJournal of microbiology and biotechnology · 2024Article
- Chloroplast genomes of Eriobotrya elliptica and an unknown wild loquat "YN-1".Scientific reports · 2024Article
- Characterization of the complete chloroplast genome of Rhodiola sachalinensis and comparative analysis with its congeneric plants.FEBS open bio · 2024Article
- First Record of Comparative Plastid Genome Analysis and Phylogenetic Relationships amongGenes · 2024Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- The complete chloroplast genome ofFrontiers in genetics · 2024Article
- Chloroplast genome structure analysis ofFrontiers in plant science · 2024Article
- Analysis of the RNA Editing Sites and Orthologous Gene Function of Transcriptome and Chloroplast Genomes in the Evolution of FiveInternational journal of molecular sciences · 2023Article
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- The complete chloroplast genome ofFrontiers in plant science · 2023Article
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Authors and funding
5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Camellia is an economically, ecologically and phylogenetically valuable genus in the family Theaceae. The frequent interspecific hybridization and polyploidization makes this genus phylogenetically and taxonomically under controversial and require detailed investigation. Chloroplast (cp) genome sequences have been used for cpDNA marker development and genetic diversity evaluation. Our research newly sequenced the chloroplast genome of Camellia japonica using Illumina HiSeq X Ten platform, and retrieved five other chloroplast genomes of Camellia previously published for comparative analyses, thereby shedding lights on a deeper understanding of the applicability of chloroplast information. The chloroplast genome sizes ranged in length from 156,607 to 157,166 bp, and their gene structure resembled those of other higher plants. There were four categories of SSRs detected in six Camellia cpDNA sequences, with the lengths ranging from 10 to 17bp. The Camellia species exhibited different evolutionary routes that lhbA and orf188, followed by orf42 and psbZ, were readily lost during evolution. Obvious codon preferences were also shown in almost all protein-coding cpDNA and amino acid sequences. Selection pressure analysis revealed the influence of different environmental pressures on different Camellia chloroplast genomes during long-term evolution. All Camellia species, except C. crapnelliana, presented the identical rate of amplification in the IR region. The datasets obtained from the chloroplast genomes are highly supportive in inferring the phylogenetic relationships of the Camellia taxa, indicating that chloroplast genome can be used for classifying interspecific relationships in this genus.
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