Evidence map›Paper›PMID 31069462›Full record

ReviewCurrent microbiology2020

Metagenomics Approaches in Discovery and Development of New Bioactive Compounds from Marine Actinomycetes.

Gyana Prakash Mahapatra, Surabhi Raman, Suman Nayak, Sushanto Gouda, Gitishree Das, Jayanta Kumar Patra

Abstract readReview
PubMed Publisher
In one paragraph

Review in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gyana Prakash MahapatraCentre for Advanced Study in Marine Biology, Annamalai University, Parangipettai, Tamilnadu, India.
Surabhi RamanCentre for Advanced Study in Marine Biology, Annamalai University, Parangipettai, Tamilnadu, India.
Suman NayakDepartment of Biotechnology and Biomedical Engineering, National Institute of Technology, Rourkela, Odisha, India.
Sushanto GoudaAmity Institute of Forestry and Wildlife, Amity University, Noida, Uttar Pradesh, India.
Gitishree DasResearch Institute of Biotechnology & Medical Converged Science, Dongguk University-Seoul, Goyang, Republic of Korea.
Jayanta Kumar PatraResearch Institute of Biotechnology & Medical Converged Science, Dongguk University-Seoul, Goyang, Republic of Korea. jkpatra.cet@gmail.com.ORCID http://orcid.org/0000-0003-4118-4355

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine actinomycetes are prolific sources of marine drug discovery system contributing for several bioactive compounds of biomedical prominence. Metagenomics, a culture-independent technique through its sequence- and function-based screening has led to the discovery and synthesis of numerous biologically significant compounds like polyketide synthase, Non-ribosomal peptide synthetase, antibiotics, and biocatalyst. While metagenomics offers different advantages over conventional sequencing techniques, they also have certain limitations including bias classification, non-availability of quality DNA samples, heterologous expression, and host selection. The assimilation of advanced amplification and screening methods such as φ29 DNA polymerase, Next-Generation Sequencing, Cosmids, and recent bioinformatics tools like automated genome mining, anti-SMASH have shown promising results to overcome these constrains. Consequently, functional genomics and bioinformatics along with synthetic biology will be crucial for the success of the metagenomic approach and indeed for exploring new possibilities among the microbial consortia for the future drug discovery process.

Indexed as

Drug DiscoveryMetagenomicsActinobacteriaAquatic OrganismsComputational BiologyHigh-Throughput Nucleotide SequencingPolyketide SynthasesPolyketide Synthases

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.