Evidence map›Paper›PMID 31069393›Full record

ArticleNucleic acids research2019

DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute.

Jorrit W Hegge, Daan C Swarts, Stanley D Chandradoss, Tao Ju Cui, Jeroen Kneppers, Martin Jinek, Chirlmin Joo, John van der Oost

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 199 citations in OpenAlex.

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  15. An Engineered PfAgo with Wide Catalytic Temperature Range and Substrate Spectrum.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jorrit W HeggeLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6708 WE Wageningen, The Netherlands.
Daan C SwartsLaboratory of Biochemistry, Department of Agrotechnology and Food Sciences, Wageningen University, 6708 WE Wageningen, The Netherlands.
Stanley D ChandradossKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, 2629 HZ Delft, The Netherlands.
Tao Ju CuiKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, 2629 HZ Delft, The Netherlands.
Jeroen KneppersLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6708 WE Wageningen, The Netherlands.
Martin JinekDepartment of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland.
Chirlmin JooKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, 2629 HZ Delft, The Netherlands.
John van der OostLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6708 WE Wageningen, The Netherlands.
Delft University of Technology · NLWageningen University & Research · NLUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prokaryotic Argonaute proteins (pAgos) constitute a diverse group of endonucleases of which some mediate host defense by utilizing small interfering DNA guides (siDNA) to cleave complementary invading DNA. This activity can be repurposed for programmable DNA cleavage. However, currently characterized DNA-cleaving pAgos require elevated temperatures (≥65°C) for their activity, making them less suitable for applications that require moderate temperatures, such as genome editing. Here, we report the functional and structural characterization of the siDNA-guided DNA-targeting pAgo from the mesophilic bacterium Clostridium butyricum (CbAgo). CbAgo displays a preference for siDNAs that have a deoxyadenosine at the 5'-end and thymidines at nucleotides 2-4. Furthermore, CbAgo mediates DNA-guided DNA cleavage of AT-rich double stranded DNA at moderate temperatures (37°C). This study demonstrates that certain pAgos are capable of programmable DNA cleavage at moderate temperatures and thereby expands the scope of the potential pAgo-based applications.

Indexed as

DNA CleavageArgonaute ProteinsBacterial ProteinsClostridium butyricumDNADNA, Single-StrandedFluorescence Resonance Energy TransferGene EditingGene SilencingMutationPhylogenyPlasmidsProtein BindingRNA, Guide, CRISPR-Cas SystemsTemperatureArgonaute ProteinsBacterial ProteinsDNADNA, Single-StrandedRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID31069393
PMCPMC6582352
OpenAlexW2952856652

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.