Evidence map›Paper›PMID 31068946›Full record

ArticleFrontiers in immunology2019

Exploratory Study of Predicted Indirectly ReCognizable HLA Epitopes in Mismatched Hematopoietic Cell Transplantations.

Kirsten Geneugelijk, Kirsten A Thus, Hanneke W M van Deutekom, Jorg J A Calis, Eric Borst, Can Keşmir, Machteld Oudshoorn, Bronno van der Holt, Ellen Meijer, Sacha Zeerleder and 6 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Experimental Data on PIRCHE and T-Cell Reactivity: HLA-DPB1-Derived Peptides Identified by PIRCHE-I Show Binding to HLA-A*02:01 in vitro and T-Cell Activation in vivo.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2024
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. HLA Matching in Unrelated Stem Cell Transplantation up to Date.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kirsten GeneugelijkLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht, Netherlands.
Kirsten A ThusLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht, Netherlands.
Hanneke W M van DeutekomDepartment of Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, Netherlands.
Jorg J A CalisDepartment of Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, Netherlands.
Eric BorstLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht, Netherlands.
Can KeşmirDepartment of Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, Netherlands.
Machteld OudshoornMatchis Foundation, Leiden, Netherlands.
Bronno van der HoltHOVON Data Center, Department of Hematology, Erasmus MC Cancer Institute, Rotterdam, Netherlands.
Ellen MeijerDepartment of Hematology, Cancer Center Amsterdam, Amsterdam UMC, VU Medical Center, Amsterdam, Netherlands.
Sacha ZeerlederDepartment of Hematology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Marco R de GrootDepartment of Haematology, University of Groningen, University Medical Centre Groningen, Groningen, Netherlands.
Peter A von dem BorneDepartment of Hematology, Leiden University Medical Center, Leiden, Netherlands.
Nicolaas SchaapDepartment of Hematology, Radboud University Medical Center, Nijmegen, Netherlands.
Jan CornelissenDepartment of Hematology, Erasmus Medical Center-Daniel Den Hoed Cancer Center, Rotterdam, Netherlands.
Jürgen KuballLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht, Netherlands.
Eric SpieringsLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht, Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HLA-mismatches in hematopoietic stem-cell transplantation are associated with an impaired overall survival (OS). The aim of this study is to explore whether the Predicted Indirectly ReCognizable HLA-Epitopes (PIRCHE) algorithm can be used to identify HLA-mismatches that are related to an impaired transplant outcome. PIRCHE are computationally predicted peptides derived from the patient's mismatched-HLA molecules that can be presented by donor-patient shared HLA. We retrospectively scored PIRCHE numbers either presented on HLA class-I (PIRCHE-I) or class-II (PIRCHE-II) for a Dutch multicenter cohort of 103 patients who received a single HLA-mismatched (9/10) unrelated donor transplant in an early phase of their disease. These patients were divided into low and high PIRCHE-I and PIRCHE-II groups, based on their PIRCHE scores, and compared using multivariate statistical analysis methods. The high PIRCHE-II group had a significantly impaired OS compared to the low PIRCHE-II group and the 10/10 reference group (HR: 1.86, 95%-CI: 1.02-3.40; and HR: 2.65, 95%-CI: 1.53-4.60, respectively). Overall, PIRCHE-II seem to have a more prominent effect on OS than PIRCHE-I. This impaired OS is probably due to an increased risk for severe acute graft-vs.-host disease. These data suggest that high PIRCHE-II scores may be used to identify non-permissible HLA mismatches within single HLA-mismatched hematopoietic stem-cell transplantations.

Indexed as

Hematopoietic Stem Cell TransplantationTransplantation ImmunologyUnrelated DonorsAdolescentAdultAgedChildChild, PreschoolEpitopesFemaleHLA AntigensHumansInfantMaleMiddle AgedProportional Hazards ModelsEpitopesHLA AntigensHLAHLA mismatchHSCT—hematopoietic stem cell transplantNon-permissible mismatchPIRCHE

Identifiers

PMID31068946
PMCPMC6491737

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.