Evidence map›Paper›PMID 31068633›Full record

ArticleScientific reports2019

Structural Insights into Catalytic Versatility of the Flavin-dependent Hydroxylase (HpaB) from Escherichia coli.

Xiaolin Shen, Dayong Zhou, Yuheng Lin, Jia Wang, Shuaihua Gao, Palani Kandavelu, Hua Zhang, Ruihua Zhang, Bi-Cheng Wang, John Rose and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Efficient synthesis of l-DOPA inSynthetic and systems biotechnology · 2026
    Article
  2. Engineering non-P450 3-hydroxylase forSynthetic and systems biotechnology · 2025
    Article
  3. Elucidating the metabolic pathway and initial degradation gene forApplied and environmental microbiology · 2025
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  7. Biosynthesis of Macrocyclic Peptides by Formation and Crosslinking ofbioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xiaolin ShenBeijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China.ORCID http://orcid.org/0000-0002-6969-2952
Dayong ZhouDepartment of Biochemistry & Molecular Biology, The University of Georgia, Athens, Georgia, 30602, USA.
Yuheng LinSchool of Chemical, Materials and Biomedical Engineering, College of Engineering, The University of Georgia, Athens, GA, 30602, USA.
Jia WangBeijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China.
Shuaihua GaoBeijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China.
Palani KandaveluDepartment of Biochemistry & Molecular Biology, The University of Georgia, Athens, Georgia, 30602, USA.
Hua ZhangDepartment of Biochemistry & Molecular Biology, The University of Georgia, Athens, Georgia, 30602, USA.
Ruihua ZhangSchool of Chemical, Materials and Biomedical Engineering, College of Engineering, The University of Georgia, Athens, GA, 30602, USA.ORCID http://orcid.org/0000-0002-8672-9673
Bi-Cheng WangDepartment of Biochemistry & Molecular Biology, The University of Georgia, Athens, Georgia, 30602, USA.
John RoseDepartment of Biochemistry & Molecular Biology, The University of Georgia, Athens, Georgia, 30602, USA. jprose@uga.edu.
Qipeng YuanBeijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China. yuanqp@mail.buct.edu.cn.
Yajun YanSchool of Chemical, Materials and Biomedical Engineering, College of Engineering, The University of Georgia, Athens, GA, 30602, USA. yajunyan@uga.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

4-Hydroxyphenylacetate 3-hydroxylase (EcHpaB) from Escherichia coli is capable of efficient ortho-hydroxylation of a wide range of phenolic compounds and demonstrates great potential for broad chemoenzymatic applications. To understand the structural and mechanistic basis of its catalytic versatility, we elucidated the crystal structure of EcHpaB by X-ray crystallography, which revealed a unique loop structure covering the active site. We further performed mutagenesis studies of this loop to probe its role in substrate specificity and catalytic activity. Our results not only showed the loop has great plasticity and strong tolerance towards extensive mutagenesis, but also suggested a flexible loop that enables the entrance and stable binding of substrates into the active site is the key factor to the enzyme catalytic versatility. These findings lay the groundwork for editing the loop sequence and structure for generation of EcHpaB mutants with improved performance for broader laboratory and industrial use.

Indexed as

BiocatalysisCatalytic DomainAmino Acid SequenceCrystallography, X-RayEscherichia coliHydroxylationKineticsMixed Function OxygenasesMutant ProteinsProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandSequence Homology, Amino AcidSubstrate SpecificityThermus thermophilus4-hydroxyphenylacetate 3-monooxygenaseMixed Function OxygenasesMutant Proteins

Identifiers

PMID31068633
PMCPMC6506529

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.