Evidence map›Paper›PMID 31068617›Full record

ArticleScientific reports2019

Calcium binding to a disordered domain of a type III-secreted protein from a coral pathogen promotes secondary structure formation and catalytic activity.

Elisabeth Hoyer, Julius Knöppel, Martina Liebmann, Michael Steppert, Manuel Raiwa, Olivia Herczynski, Erik Hanspach, Susanne Zehner, Michael Göttfert, Satoru Tsushima and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Elisabeth HoyerTechnische Universität Dresden, Institute of Genetics, Zellescher Weg 20b, D-01217, Dresden, Germany.
Julius KnöppelHelmholtz-Zentrum Dresden - Rossendorf, Bautzner Landstrasse 400, D-01328, Dresden, Germany.
Martina LiebmannTechnische Universität Dresden, Institute of Genetics, Zellescher Weg 20b, D-01217, Dresden, Germany.
Michael SteppertLeibniz University Hannover, Institute of Radioecology and Radiation Protection, Herrenhäuser Str. 2, D-30419, Hannover, Germany.
Manuel RaiwaLeibniz University Hannover, Institute of Radioecology and Radiation Protection, Herrenhäuser Str. 2, D-30419, Hannover, Germany.
Olivia HerczynskiTechnische Universität Dresden, Institute of Genetics, Zellescher Weg 20b, D-01217, Dresden, Germany.
Erik HanspachTechnische Universität Dresden, Institute of Genetics, Zellescher Weg 20b, D-01217, Dresden, Germany.
Susanne ZehnerTechnische Universität Dresden, Institute of Genetics, Zellescher Weg 20b, D-01217, Dresden, Germany.ORCID http://orcid.org/0000-0003-3758-484X
Michael GöttfertTechnische Universität Dresden, Institute of Genetics, Zellescher Weg 20b, D-01217, Dresden, Germany.ORCID http://orcid.org/0000-0001-9355-6670
Satoru TsushimaHelmholtz-Zentrum Dresden - Rossendorf, Bautzner Landstrasse 400, D-01328, Dresden, Germany.ORCID http://orcid.org/0000-0002-4520-6147
Karim FahmyHelmholtz-Zentrum Dresden - Rossendorf, Bautzner Landstrasse 400, D-01328, Dresden, Germany.ORCID http://orcid.org/0000-0002-8752-5824
Jana OertelHelmholtz-Zentrum Dresden - Rossendorf, Bautzner Landstrasse 400, D-01328, Dresden, Germany. j.oertel@hzdr.de.ORCID http://orcid.org/0000-0001-6045-1514

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strains of the Gram-negative bacterium Vibrio coralliilyticus cause the bleaching of corals due to decomposition of symbiotic microalgae. The V. coralliilyticus strain ATCC BAA-450 (Vc450) encodes a type III secretion system (T3SS). The gene cluster also encodes a protein (locus tag VIC_001052) with sequence homology to the T3SS-secreted nodulation proteins NopE1 and NopE2 of Bradyrhizobium japonicum (USDA110). VIC_001052 has been shown to undergo auto-cleavage in the presence of Ca

Indexed as

BiocatalysisProtein DomainsAmino Acid SequenceAnimalsAnthozoaBacterial ProteinsBinding SitesCalciumCalorimetryEF Hand MotifsEscherichia coliMass SpectrometryMolecular Dynamics SimulationProtein Structure, SecondarySpectrometry, FluorescenceSymbiosisBacterial ProteinsCalciumType III Secretion Systems

Identifiers

PMID31068617
PMCPMC6506597

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.