Evidence map›Paper›PMID 31068422›Full record

ArticleJournal of virology2019

Picornavirus RNA Recombination Counteracts Error Catastrophe.

Brian J Kempf, Colleen L Watkins, Olve B Peersen, David J Barton

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

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  15. Recombination in Positive-Strand RNA Viruses.Frontiers in microbiology · 2022
    Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Brian J KempfDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, Colorado, USA.
Colleen L WatkinsDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
Olve B PeersenDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
David J BartonDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, Colorado, USA David.Barton@ucdenver.edu.
Colorado State University · USUniversity of Colorado Denver · US

Funding

Enterovirus RNA Translation and ReplicationR01AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 1998 to 2024
$7.2M
Assembly of Picornaviral Replication ComplexesR01AI059130 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI PEERSEN, OLVE BREIEN · 2004 to 2021
$4.6M
Assembly of Picornaviral Replication ComplexesR37AI059130 · NIAID · COLORADO STATE UNIVERSITY · PI Olve Breien Peersen · 2023 to 2026
$1.5M
Enterovirus RNA Translation and ReplicationR56AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2009 to 2009
$341k
Assembly of Picornaviral Replication ComplexesR56AI059130 · NIAID · COLORADO STATE UNIVERSITY · PI PEERSEN, OLVE BREIEN · 2009 to 2009
$324k
Enterovirus RNA Translation and ReplicationR21AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2003 to 2003
$268k
NIAID NIH HHS R01 AI042189NIAID NIH HHS R01 AI059130NIAID NIH HHS R21 AI042189NIAID NIH HHS R37 AI059130NIAID NIH HHS R56 AI042189NIAID NIH HHS R56 AI059130
6 · The paper itself

Abstract

Template-dependent RNA replication mechanisms render picornaviruses susceptible to error catastrophe, an overwhelming accumulation of mutations incompatible with viability. Viral RNA recombination, in theory, provides a mechanism for viruses to counteract error catastrophe. We tested this theory by exploiting well-defined mutations in the poliovirus RNA-dependent RNA polymerase (RDRP), namely, a G64S mutation and an L420A mutation. Our data reveal two distinct mechanisms by which picornaviral RDRPs influence error catastrophe: fidelity of RNA synthesis and RNA recombination. A G64S mutation increased the fidelity of the viral polymerase and rendered the virus resistant to ribavirin-induced error catastrophe, but only when RNA recombination was at wild-type levels. An L420A mutation in the viral polymerase inhibited RNA recombination and exacerbated ribavirin-induced error catastrophe. Furthermore, when RNA recombination was substantially reduced by an L420A mutation, a high-fidelity G64S polymerase failed to make the virus resistant to ribavirin. These data indicate that viral RNA recombination is required for poliovirus to evade ribavirin-induced error catastrophe. The conserved nature of L420 within RDRPs suggests that RNA recombination is a common mechanism for picornaviruses to counteract and avoid error catastrophe.

Indexed as

PoliovirusRNA-Dependent RNA PolymeraseRNA, ViralViral ProteinsAmino Acid SubstitutionAnimalsHeLa CellsHumansMiceMutation, MissenseRecombination, GeneticRibavirinRNARibavirinRNARNA-Dependent RNA PolymeraseRNA, recombinantRNA, ViralViral Proteinsasexual RNA replicationerror catastrophepicornavirusribavirinRNA polymerasesRNA recombinationsexual RNA replication

Identifiers

PMID31068422
PMCPMC6600191
OpenAlexW2944413841

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.