Evidence map›Paper›PMID 31067472›Full record

ArticleCell reports2019

Extracellular Matrix Geometry and Initial Adhesive Position Determine Stress Fiber Network Organization during Cell Spreading.

Elena Kassianidou, Dimitri Probst, Julia Jäger, Stacey Lee, Anne-Lou Roguet, Ulrich Sebastian Schwarz, Sanjay Kumar

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Cell-extracellular matrix mechanotransduction in 3D.Nature reviews. Molecular cell biology · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. On the Interaction between 1D Materials and Living Cells.Journal of functional biomaterials · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Elena KassianidouDepartment of Bioengineering, University of California, Berkeley, CA 94720-1762, USA; UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, Berkeley, Berkeley, CA 94720-1762, USA.
Dimitri ProbstHeidelberg University, Institute for Theoretical Physics and BioQuant-Center for Quantitative Biology, Philosophenweg 19, 69120 Heidelberg, Germany.
Julia JägerHeidelberg University, Institute for Theoretical Physics and BioQuant-Center for Quantitative Biology, Philosophenweg 19, 69120 Heidelberg, Germany.
Stacey LeeDepartment of Bioengineering, University of California, Berkeley, CA 94720-1762, USA; UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, Berkeley, Berkeley, CA 94720-1762, USA.
Anne-Lou RoguetDepartment of Bioengineering, University of California, Berkeley, CA 94720-1762, USA; École Polytechnique, 91120 Palaiseau, France.
Ulrich Sebastian SchwarzHeidelberg University, Institute for Theoretical Physics and BioQuant-Center for Quantitative Biology, Philosophenweg 19, 69120 Heidelberg, Germany. Electronic address: schwarz@thphys.uni-heidelberg.de.
Sanjay KumarDepartment of Bioengineering, University of California, Berkeley, CA 94720-1762, USA; UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, Berkeley, Berkeley, CA 94720-1762, USA; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, CA 94720-1762, USA. Electronic address: skumar@berkeley.edu.
Heidelberg University · DEUniversity of California, Berkeley · USÉcole Polytechnique · FR

Funding

Biophysical Control of Cell Form and Function by Single Actomyosin Stress Fibers: Instrument SupplementR01GM122375 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2017 to 2025
$2.7M
High-throughput Analysis of MicroRNA Regulation of Stem Cell MechanobiologyR21EB025017 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2017 to 2018
$411k
Mechanical Regulation of Cell Shape and Migration by Actin Stress Fiber SubpopulationsF31GM119329 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI LEE, STACEY · 2017 to 2018
$78k
Howard Hughes Medical InstituteNIBIB NIH HHS R21 EB025017NIGMS NIH HHS F31 GM119329NIGMS NIH HHS R01 GM122375
6 · The paper itself

Abstract

Three-dimensional matrices often contain highly structured adhesive tracks that require cells to turn corners and bridge non-adhesive areas. Here, we investigate these complex processes using micropatterned cell adhesive frames. Spreading kinetics on these matrices depend strongly on initial adhesive position and are predicted by a cellular Potts model (CPM), which reflects a balance between adhesion and intracellular tension. As cells spread, new stress fibers (SFs) assemble periodically and parallel to the leading edge, with spatial intervals of ∼2.5 μm, temporal intervals of ∼15 min, and characteristic lifetimes of ∼50 min. By incorporating these rules into the CPM, we can successfully predict SF network architecture. Moreover, we observe broadly similar behavior when we culture cells on arrays of discrete collagen fibers. Our findings show that ECM geometry and initial cell position strongly determine cell spreading and that cells encode a memory of their spreading history through SF network organization.

Indexed as

Cell MovementActin CytoskeletonCell AdhesionCell Line, TumorCollagenComputer SimulationExtracellular MatrixHalf-LifeHeterocyclic Compounds, 4 or More RingsHumansKineticsModels, BiologicalPseudopodiaStress FibersTime FactorsblebbistatinCollagenHeterocyclic Compounds, 4 or More Ringsactin cytoskeletoncell-matrix adhesioncell memorycell migrationcell shapecell spreadingcellular Potts modelmathematical modelingmechanobiologystress fibers

Identifiers

PMID31067472
PMCPMC6530591
OpenAlexW2944290552

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.