Evidence map›Paper›PMID 31067316›Full record

ArticleHuman molecular genetics2019

A de novo substitution in BCL11B leads to loss of interaction with transcriptional complexes and craniosynostosis.

Jacqueline A C Goos, Walter K Vogel, Hana Mlcochova, Christopher J Millard, Elahe Esfandiari, Wisam H Selman, Eduardo Calpena, Nils Koelling, Evan L Carpenter, Sigrid M A Swagemakers and 7 more

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Human molecular genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 2 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 2 syntheses or guidelines pooled it, 32 citations in OpenAlex.

  1. BCL11B-related disease: a single phenotypic entity?European journal of human genetics : EJHG · 2025
    Pooled it
  2. Pooled it
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  10. [BCL11B associated disorder a case report in Mexican population. Case report].Revista medica del Instituto Mexicano del Seguro Social · 2024
    Article
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  18. Multisuture craniosynostosis: a case report of unusual presentation of chromosome 14q32 deletion.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2023
    Article
  19. Article
  20. Case report: A novel truncating variant ofFrontiers in pediatrics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 4 countries.

Jacqueline A C GoosDepartments of Plastic and Reconstructive Surgery and Hand Surgery.
Walter K VogelDepartment of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
Hana MlcochovaClinical Genetics Group, MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK.
Christopher J MillardLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.
Elahe EsfandiariDepartment of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
Wisam H SelmanDepartment of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
Eduardo CalpenaClinical Genetics Group, MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK.
Nils KoellingClinical Genetics Group, MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK.
Evan L CarpenterDepartment of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
Sigrid M A SwagemakersBioinformatics, Erasmus MC, University Medical Center Rotterdam, CA Rotterdam, The Netherlands.
Peter J van der SpekBioinformatics, Erasmus MC, University Medical Center Rotterdam, CA Rotterdam, The Netherlands.
Theresa M FiltzDepartment of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
John W R SchwabeLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.
Urszula T IwaniecSkeletal Biology Laboratory, School of Biological and Population Health Sciences, Oregon State University, Corvallis, OR, USA.
Irene M J MathijssenDepartments of Plastic and Reconstructive Surgery and Hand Surgery.
Mark LeidDepartment of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR, USA.
Stephen R F TwiggClinical Genetics Group, MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK.
Oregon State University · USJohn Radcliffe Hospital · GBErasmus MC · NLUniversity of Leicester · GB

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Role of BCL11B in development of the craniofacial skeletonR15HD088273 · NICHD · OREGON STATE UNIVERSITY · PI LEID, MARK E · 2017 to 2017
$441k
Department of HealthMedical Research Council G0902418Medical Research Council MC_UU_12025NICHD NIH HHS R15 HD088273NIGMS NIH HHS P41 GM103311Wellcome Trust 102731Wellcome Trust 102731/Z/13/ZWellcome Trust WT100237
6 · The paper itself

Abstract

Craniosynostosis, the premature ossification of cranial sutures, is a developmental disorder of the skull vault, occurring in approximately 1 in 2250 births. The causes are heterogeneous, with a monogenic basis identified in ~25% of patients. Using whole-genome sequencing, we identified a novel, de novo variant in BCL11B, c.7C>A, encoding an R3S substitution (p.R3S), in a male patient with coronal suture synostosis. BCL11B is a transcription factor that interacts directly with the nucleosome remodelling and deacetylation complex (NuRD) and polycomb-related complex 2 (PRC2) through the invariant proteins RBBP4 and RBBP7. The p.R3S substitution occurs within a conserved amino-terminal motif (RRKQxxP) of BCL11B and reduces interaction with both transcriptional complexes. Equilibrium binding studies and molecular dynamics simulations show that the p.R3S substitution disrupts ionic coordination between BCL11B and the RBBP4-MTA1 complex, a subassembly of the NuRD complex, and increases the conformational flexibility of Arg-4, Lys-5 and Gln-6 of BCL11B. These alterations collectively reduce the affinity of BCL11B p.R3S for the RBBP4-MTA1 complex by nearly an order of magnitude. We generated a mouse model of the BCL11B p.R3S substitution using a CRISPR-Cas9-based approach, and we report herein that these mice exhibit craniosynostosis of the coronal suture, as well as other cranial sutures. This finding provides strong evidence that the BCL11B p.R3S substitution is causally associated with craniosynostosis and confirms an important role for BCL11B in the maintenance of cranial suture patency.

Indexed as

Chromatin Assembly and DisassemblyMutation, MissenseOsteogenesisAnimalsCranial SuturesCraniosynostosesDisease Models, AnimalDNA Mutational AnalysisHumansInfantMaleMiceNucleosomesProtein BindingProtein ConformationRepressor ProteinsBCL11B protein, humanBcl11b protein, mouseMTA1 protein, humanNucleosomesRBBP4 protein, humanRepressor ProteinsRetinoblastoma-Binding Protein 4Trans-ActivatorsTumor Suppressor Proteins

Identifiers

PMID31067316
PMCPMC6644156
OpenAlexW2932394489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.