Evidence map›Paper›PMID 31066673›Full record

ArticleeLife2019

Generation of endogenous pH-sensitive EGF receptor and its application in high-throughput screening for proteins involved in clathrin-mediated endocytosis.

Mads Breum Larsen, Mireia Perez Verdaguer, Brigitte F Schmidt, Marcel P Bruchez, Simon C Watkins, Alexander Sorkin

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mads Breum LarsenDepartment of Cell Biology, School of Medicine, University of Pittsburgh, Pittsburgh, United States.
Mireia Perez VerdaguerDepartment of Cell Biology, School of Medicine, University of Pittsburgh, Pittsburgh, United States.
Brigitte F SchmidtMolecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, United States.
Marcel P BruchezMolecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, United States.ORCID 0000-0002-7370-4848
Simon C WatkinsDepartment of Cell Biology, School of Medicine, University of Pittsburgh, Pittsburgh, United States.ORCID 0000-0003-4092-1552
Alexander SorkinDepartment of Cell Biology, School of Medicine, University of Pittsburgh, Pittsburgh, United States.ORCID 0000-0002-4446-1920
University of Pittsburgh · USImaging Center · USSharp Edge Labs (United States) · US

Funding

PATHOGENESIS OF CANCER--ROLE OF EGF RECEPTOR ENDOCYTOSISR01CA089151 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SORKIN, ALEXANDER D · 2001 to 2023
$6.9M
Targeted fluorescent indicators for endothelial physiology: Ca(II), ROS, NOR01EB017268 · NIBIB · CARNEGIE-MELLON UNIVERSITY · PI BRUCHEZ, MARCEL P, ST CROIX, CLAUDETTE MARIE · 2013 to 2016
$2.5M
Signaling by the EGF Receptor from EndosomesR01GM124186 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SORKIN, ALEXANDER D · 2017 to 2021
$1.6M
Fluorogen Activating Peptide-Based FRET to Quantify FceRI Activation MechanismsR01GM114075 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BRUCHEZ, MARCEL P, LIDKE, DIANE · 2015 to 2018
$1.2M
NCI NIH HHS R01 CA089151NIBIB NIH HHS R01 EB017268NIGMS NIH HHS R01 GM114075NIGMS NIH HHS R01 GM124186NIH HHS GM124186NIH HHS R01EB017268NIH HHS R01GM114075
6 · The paper itself

Abstract

Previously we used gene-editing to label endogenous EGF receptor (EGFR) with GFP and demonstrate that picomolar concentrations of EGFR ligand drive signaling and endocytosis of EGFR in tumors in vivo (Pinilla-Macua et al., 2017). We now use gene-editing to insert a fluorogen activating protein (FAP) in the EGFR extracellular domain. Binding of the tandem dye pair MG-Bis-SA to FAP-EGFR provides a ratiometric pH-sensitive model with dual fluorescence excitation and a single far-red emission. The excitation ratio of fluorescence intensities was demonstrated to faithfully report the fraction of FAP-EGFR located in acidic endosomal/lysosomal compartments. Coupling native FAP-EGFR expression with the high method sensitivity has allowed development of a high-throughput assay to measure the rates of clathrin-mediated FAP-EGFR endocytosis stimulated with physiological EGF concentrations. The assay was utilized to screen a phosphatase siRNA library. These studies highlight the utility of endogenous pH-sensitive FAP-receptor chimeras in high-throughput analysis of endocytosis.

Indexed as

EndocytosisClathrinErbB ReceptorsGene EditingHydrogen-Ion ConcentrationProtein EngineeringRecombinant ProteinsSpectrum AnalysisClathrinErbB ReceptorsRecombinant Proteinscell biologyEGF receptorendocytosishumanRNAi

Identifiers

PMID31066673
PMCPMC6533059
OpenAlexW2943932287

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.