Evidence map›Paper›PMID 31064322›Full record

ArticleBMC plant biology2019

Genome-wide association study (GWAS) of leaf cuticular wax components in Camelina sativa identifies genetic loci related to intracellular wax transport.

Zinan Luo, Pernell Tomasi, Noah Fahlgren, Hussein Abdel-Haleem

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Growth and physiological response of YuluPlant signaling & behavior · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Environmentally responsive QTL controlling surface wax load in switchgrass.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  12. Article
  13. Article
  14. Metabolic Engineering a Model OilseedFrontiers in plant science · 2020
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Zinan LuoUS Arid Land Agricultural Research Center, USDA ARS, Maricopa, AZ, 85138, USA. Lily.Luo@ARS.USDA.GOV.
Pernell TomasiUS Arid Land Agricultural Research Center, USDA ARS, Maricopa, AZ, 85138, USA.
Noah FahlgrenDanforth Plant Science Center, St. Louis, MO, 63132, USA.
Hussein Abdel-HaleemUS Arid Land Agricultural Research Center, USDA ARS, Maricopa, AZ, 85138, USA. Hussein.Abdel-Haleem@ARS.USDA.GOV.
U.S. Arid Land Agricultural Research Center · USDonald Danforth Plant Science Center · US

Funding

National Institute of Food and Agriculture 2016-67009-25639
6 · The paper itself

Abstract

backgroundIt is important to explore renewable alternatives (e.g. biofuels) that can produce energy sources to help reduce reliance on fossil oils, and reduce greenhouse gases and waste solids resulted from fossil oils consumption. Camelina sativa is an oilseed crop which has received increasing attention due to its short life cycle, broader adaptation regions, high oil content, high level of omega-3 unsaturated fatty acids, and low-input requirements in agriculture practices. To expand its Camelina production areas into arid regions, there is a need to breed for new drought-tolerant cultivars. Leaf cuticular wax is known to facilitate plant development and growth under water-limited conditions. Dissecting the genetic loci underlying leaf cuticular waxes is important to breed for cultivars with improved drought tolerance.

resultsHere we combined phenotypic data and single nucleotide polymorphism (SNP) data from a spring C. sativa diversity panel using genotyping-by-sequencing (GBS) technology, to perform a large-scale genome-wide association study (GWAS) on leaf wax compositions. A total of 42 SNP markers were significantly associated with 15 leaf wax traits including major wax components such as total primary alcohols, total alkanes, and total wax esters as well as their constituents. The vast majority of significant SNPs were associated with long-chain carbon monomers (carbon chain length longer than C

conclusionsThese loci could potentially serve as candidates for the genetic control involved in intracellular wax transport that might directly or indirectly facilitate leaf wax accumulation in C. sativa and can be used in future marker-assisted selection (MAS) to breed for the cultivars with high wax content to improve drought tolerance.

Indexed as

Polymorphism, Single NucleotideAlcoholsAldehydesAlgorithmsAlkanesBiological TransportBrassicaceaeGenetics, PopulationGenome-Wide Association StudyLinkage DisequilibriumPhenotypePlant LeavesWaxesAlcoholsAldehydesAlkanesWaxesCamelina sativaGenome-wide association studies (GWAS)Intracellular wax transportLeaf cuticular wax

Identifiers

PMID31064322
PMCPMC6505076
OpenAlexW2947553484

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.