Evidence map›Paper›PMID 31063017›Full record

ArticleGut microbes2020

Bacterial TLR4 and NOD2 signaling linked to reduced mitochondrial energy function in active inflammatory bowel disease.

Emmanuelle Ruiz, Harrison M Penrose, Sandra Heller, Hani Nakhoul, Melody Baddoo, Erik F Flemington, Emad Kandil, Suzana D Savkovic

Open access · goldAbstract read
In one paragraph

Article in Gut microbes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Role of Mitochondria in Inflammatory Bowel Diseases: A Systematic Review.International journal of molecular sciences · 2023
    Pooled it
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Mediators of Metabolism: An Unconventional Role for NOD1 and NOD2.International journal of molecular sciences · 2021
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Emmanuelle RuizDivision of Endocrine and Oncologic Surgery, Department of Surgery, Tulane University , New Orleans, LA, USA.
Harrison M PenroseDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine , New Orleans, LA, USA.
Sandra HellerDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine , New Orleans, LA, USA.
Hani NakhoulDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine , New Orleans, LA, USA.ORCID 0000-0002-8045-2175
Melody BaddooDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine , New Orleans, LA, USA.
Erik F FlemingtonDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine , New Orleans, LA, USA.
Emad KandilDivision of Endocrine and Oncologic Surgery, Department of Surgery, Tulane University , New Orleans, LA, USA.
Suzana D SavkovicDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine , New Orleans, LA, USA.
Tulane University · US

Funding

"Project 3" MHV68 IncRNA/miRNA interaction in latency and lympomagenesisP01CA214091 · NCI · UNIVERSITY OF FLORIDA · PI ERIK K FLEMINGTON · 2017 to 2026
$15.9M
UAB Center for Clinical and Translational Sciences (CCTS)TL1TR001418 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SAAG, KENNETH G · 2015 to 2018
$2.1M
RPMS1 circular RNAs in EBV malignanciesR01CA243793 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2019 to 2023
$1.8M
Regulation of DGAT - dependent lipogenesis in colonic epithelial growthR01CA252055 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI SAVKOVIC, SUZANA D. · 2021 to 2025
$1.6M
Regulation of Lipid Droplets and FOXO3 in Intestinal Epithelial Cell ProliferatioR01CA160809 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI SAVKOVIC, SUZANA D. · 2012 to 2015
$1.2M
Assessing the EBV circular RNAomeR21CA236549 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI FLEMINGTON, ERIK K · 2019 to 2020
$362k
NCATS NIH HHS TL1 TR001418NCI NIH HHS P01 CA214091NCI NIH HHS R01 CA160809NCI NIH HHS R01 CA243793NCI NIH HHS R01 CA252055NCI NIH HHS R21 CA236549
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) has been linked to active signaling with bacterial components and reduced mitochondrial ATP production; however, synergism between both of these disease characteristics remains unclear. We aimed to determine in human IBD transcriptomes the link between a transcriptional signature unique to intestinal cells (ICs) with reduced mitochondrial ATP production (Mito-0) and bacteria triggered signaling using a bioinformatics approach. We generated an IC Mito-0 panel comprised of 199 differentially expressed (DE) transcripts mediated by reduced mitochondrial ATP function (DEGseq, log

Indexed as

Adenosine TriphosphateBacteriaComputational BiologyHumansInflammationInflammatory Bowel DiseasesIntestinal MucosaMitochondriaNod2 Signaling Adaptor ProteinSignal TransductionToll-Like Receptor 4TranscriptomeAdenosine TriphosphateNOD2 protein, humanNod2 Signaling Adaptor ProteinTLR4 protein, humanToll-Like Receptor 4bioinformaticsinflammatory bowel diseasemitochondriaNOD2TLR4

Identifiers

PMID31063017
PMCPMC7524318
OpenAlexW2944675851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.