Evidence map›Paper›PMID 31062394›Full record

ArticleAmerican journal of primatology2019

Comparative genomics of Bifidobacterium species isolated from marmosets and humans.

Celeste J Brown, Dorah Mtui, Benjamin P Oswald, James T Van Leuven, Eric J Vallender, Nancy Schultz-Darken, Corinna N Ross, Suzette D Tardif, Steven N Austad, Larry J Forney

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in American journal of primatology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Association of Primate Veterinarians Guidelines for the Management of Diarrhea.Journal of the American Association for Laboratory Animal Science : JAALAS · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Recent Development of ProbioticFrontiers in bioengineering and biotechnology · 2021
    Review
  10. Review
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Celeste J BrownDepartment of Biological Science, University of Idaho, Moscow, Idaho.ORCID 0000-0002-1202-323X
Dorah MtuiDepartment of Biological Science, University of Idaho, Moscow, Idaho.
Benjamin P OswaldDepartment of Biological Science, University of Idaho, Moscow, Idaho.
James T Van LeuvenCenter for Modeling Complex Interactions, University of Idaho, Moscow, Idaho.
Eric J VallenderNew England Primate Research Center, Harvard Medical School, Southborough, Massachusetts.
Nancy Schultz-DarkenWisconsin National Primate Research Center, University of Wisconsin, Madison, Wisconsin.
Corinna N RossSouthwest National Primate Research Center, Texas Biomedical Research Institute, San Antonio, Texas.
Suzette D TardifSouthwest National Primate Research Center, Texas Biomedical Research Institute, San Antonio, Texas.ORCID 0000-0002-3412-7742
Steven N AustadDepartment of Cellular and Structural Biology, University of Texas Health Science Center at San Antonio, San Antonio, Texas.
Larry J ForneyDepartment of Biological Science, University of Idaho, Moscow, Idaho.
University of Idaho · USTexas Biomedical Research Institute · USNew England Biolabs (United States) · USThe University of Texas Health Science Center at San Antonio · USUniversity of Wisconsin–Madison · US

Funding

WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7M
The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
New England Primate Research Center Base GrantP51OD011103 · OD · HARVARD MEDICAL SCHOOL · PI FLIER, JEFFREY S · 2012 to 2013
$24.7M
Sequence-structure-function relationships in human visual photopigmentsP20GM104420 · NIGMS · UNIVERSITY OF IDAHO · PI WICHMAN, HOLLY A · 2015 to 2024
$22.9M
San Antonio OAIC - Research Education Component (REC)P30AG044271 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Adam Salmon, Elena Volpi · 2015 to 2026
$14.1M
Genomics Resources Core (GRC)P30GM103324 · NIGMS · UNIVERSITY OF IDAHO · PI FORNEY, LARRY J · 2013 to 2017
$5.0M
Research to Improve and Standardize Marmoset Nutrition and Dietary HusbandryR24OD020347 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI COLMAN, RICKI J, POWER, MICHAEL L. · 2016 to 2019
$2.9M
Development of a Barrier Colony of Common Marmosets (R24)R24RR023344 · NCRR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI AUSTAD, STEVEN N. · 2010 to 2011
$1.2M
NCRR NIH HHS R24 RR023344NIA NIH HHS P30 AG044271NIGMS NIH HHS P20 GM104420NIGMS NIH HHS P30 GM103324NIH HHS P51 OD011103NIH HHS P51 OD011106NIH HHS P51 OD011133NIH HHS R24 OD020347
6 · The paper itself

Abstract

The genus Bifidobacterium is purported to have beneficial consequences for human health and is a major component of many gastrointestinal probiotics. Although species of Bifidobacterium are generally at low relative frequency in the adult human gastrointestinal tract, they can constitute high proportions of the gastrointestinal communities of adult marmosets. To identify genes that might be important for the maintenance of Bifidobacterium in adult marmosets, ten strains of Bifidobacterium were isolated from the feces of seven adult marmosets, and their genomes were sequenced. There were six B. reuteri strains, two B. callitrichos strains, one B. myosotis sp. nov. and one B. tissieri sp. nov. among our isolates. Phylogenetic analysis showed that three of the four species we isolated were most closely related to B. bifidum, B. breve and B. longum, which are species found in high abundance in human infants. There were 1357 genes that were shared by at least one strain of B. reuteri, B. callitrichos, B. breve, and B. longum, and 987 genes that were found in all strains of the four species. There were 106 genes found in B. reuteri and B. callitrichos but not in human bifidobacteria, and several of these genes were involved in nutrient uptake. These pathways for nutrient uptake appeared to be specific to Bifidobacterium from New World monkeys. Additionally, the distribution of Bifidobacterium in fecal samples from captive adult marmosets constituted as much as 80% of the gut microbiome, although this was variable between individuals and colonies. We suggest that nutrient transporters may be important for the maintenance of Bifidobacterium during adulthood in marmosets.

Indexed as

GenomicsAnimalsBifidobacteriumCallithrixFecesFemaleGastrointestinal MicrobiomeGenome, BacterialHumansMalePhosphotransferasesPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNAPhosphotransferasesRNA, Ribosomal, 16SBifidobacteriumgenomicshumansmarmosets

Identifiers

PMID31062394
PMCPMC6900142
OpenAlexW2943999743

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.