Evidence map›Paper›PMID 31061531›Full record

ArticleNature immunology2019

Integrative proteomics reveals an increase in non-degradative ubiquitylation in activated CD4

Joseph M Dybas, Claire E O'Leary, Hua Ding, Lynn A Spruce, Steven H Seeholzer, Paula M Oliver

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Further comments on the role of ACE-2 positive macrophages in human lung.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2023
    Article
  11. Characterization of proteogenomic signatures of differentiation of CD4+ T cell subsets.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023
    Article
  12. The ubiquitin ligase Cul5 regulates CD4Nature communications · 2022
    Article
  13. Article
  14. Review
  15. Article
  16. The Analysis of the Ubiquitylomic Responses toJournal of inflammation research · 2022
    Article
  17. Observational
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Joseph M DybasDivision of Protective Immunity, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Claire E O'LearyCell Pathology Division, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Hua DingCell Pathology Division, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Lynn A SpruceCell Pathology Division, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-9640-9158
Steven H SeeholzerCell Pathology Division, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Paula M OliverDivision of Protective Immunity, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. paulao@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0002-0455-3767
Children's Hospital of Philadelphia · US

Funding

Nedd4-family adaptors and their regulation of T cell function.R01AI093566 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI OLIVER, PAULA MARIA · 2011 to 2020
$4.2M
Mechanisms of ubiquitin pathway activation and functionR01AI114515 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI OLIVER, PAULA MARIA · 2015 to 2019
$2.1M
Ndfip2 limits Th17 pathogenicity to attenuate colitis-associated colon cancerF31CA180300 · NCI · UNIVERSITY OF PENNSYLVANIA · PI O'LEARY, CLAIRE E · 2013 to 2014
$71k
NCI NIH HHS F31 CA180300NIAID NIH HHS R01 AI093566NIAID NIH HHS R01 AI114515
6 · The paper itself

Abstract

Despite gathering evidence that ubiquitylation can direct non-degradative outcomes, most investigations of ubiquitylation in T cells have focused on degradation. Here, we integrated proteomic and transcriptomic datasets from primary mouse CD4

Indexed as

ProteomeProteomicsAnimalsCD4-Positive T-LymphocytesGene Expression ProfilingLymphocyte ActivationMass SpectrometryMicePolyubiquitinReceptors, Antigen, T-CellSignal TransductionT-Lymphocyte SubsetsTranscriptomeUbiquitinationPolyubiquitinProteomeReceptors, Antigen, T-Cell

Identifiers

PMID31061531
PMCPMC7007700
OpenAlexW2943810232

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.