Evidence map›Paper›PMID 31061492›Full record

ArticleNature methods2019

Epi-illumination SPIM for volumetric imaging with high spatial-temporal resolution.

Bin Yang, Xingye Chen, Yina Wang, Siyu Feng, Veronica Pessino, Nico Stuurman, Nathan H Cho, Karen W Cheng, Samuel J Lord, Linfeng Xu and 4 more

Abstract read
In one paragraph

Article in Nature methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed.

  1. Space-time light-sheet microscopy.Nature communications · 2026
    Article
  2. A Correlative SICM-OPM Platform for Surface and Volumetric Imaging in Live Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Polarization-engineered aberration-resilient light sheet microscopy.bioRxiv : the preprint server for biology · 2026
    Article
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  17. Hyperspectral oblique plane microscopy enables spontaneous, label-free imaging of biological dynamic processes in live animals.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Bin YangDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-5138-4663
Xingye ChenDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.
Yina WangDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.
Siyu FengThe UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco, San Francisco, CA, USA.
Veronica PessinoDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.
Nico StuurmanDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-6179-8613
Nathan H ChoChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-0110-1343
Karen W ChengDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
Samuel J LordDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-2785-989X
Linfeng XuDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-1358-2455
Dan XieDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.
R Dyche MullinsDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
Manuel D LeonettiChan Zuckerberg Biohub, San Francisco, CA, USA.
Bo HuangDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA. bo.huang@ucsf.edu.ORCID http://orcid.org/0000-0003-1704-4141

Funding

Assembly and function of cytoskeletal systems in eukaryotic and prokaryoticcellsR35GM118119 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MULLINS, R DYCHE · 2016 to 2025
$4.8M
Structure mapping of molecular complexes by super-resolution microscopyR01GM124334 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, BO · 2018 to 2021
$1.3M
Analyzing genomic elements in live animals by CRISPR imagingR33EB019784 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, BO · 2014 to 2016
$1.1M
Multimerized GFP probe for live cell imagingR21EB022798 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, BO · 2016 to 2017
$436k
NIBIB NIH HHS R21 EB022798NIBIB NIH HHS R33 EB019784NIGMS NIH HHS R01 GM124334NIGMS NIH HHS R35 GM118119
6 · The paper itself

Abstract

We designed an epi-illumination SPIM system that uses a single objective and has a sample interface identical to that of an inverted fluorescence microscope with no additional reflection elements. It achieves subcellular resolution and single-molecule sensitivity, and is compatible with common biological sample holders, including multi-well plates. We demonstrated multicolor fast volumetric imaging, single-molecule localization microscopy, parallel imaging of 16 cell lines and parallel recording of cellular responses to perturbations.

Indexed as

AnimalsDrosophilaHEK293 CellsHumansImage Processing, Computer-AssistedImaging, Three-DimensionalLightingMicroscopy, FluorescenceMolecular ImagingSingle-Cell AnalysisSpatio-Temporal Analysis

Identifiers

PMID31061492
PMCPMC6557432

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.