Evidence map›Paper›PMID 31060517›Full record

ArticleBMC medical genetics2019

Novel BRCA2 pathogenic variant c.5219 T > G; p.(Leu1740Ter) in a consanguineous Senegalese family with hereditary breast cancer.

Jean Pascal Demba Diop, Rokhaya Ndiaye Diallo, Violaine Bourdon-Huguenin, Ahmadou Dem, Doudou Diouf, Mamadou Moustapha Dieng, Seydi Abdoul Ba, Yacouba Dia, Sidy Ka, Babacar Mbengue and 5 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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  6. Evidence for an ancientNPJ genomic medicine · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Jean Pascal Demba DiopLaboratory of Cytology, Cytogenetics and Reproductive Biology, Le Dantec Hospital, Dakar, Senegal.
Rokhaya Ndiaye DialloLaboratory of Cytology, Cytogenetics and Reproductive Biology, Le Dantec Hospital, Dakar, Senegal. dabafr@yahoo.fr.ORCID 0000-0002-4287-9178
Violaine Bourdon-HugueninLaboratory of Molecular Oncogenetics, Paoli-Calmette Institute, Marseille, France.
Ahmadou DemJoliot Curie Institute, Le Dantec Hospital, Dakar, Senegal.
Doudou DioufJoliot Curie Institute, Le Dantec Hospital, Dakar, Senegal.
Mamadou Moustapha DiengJoliot Curie Institute, Le Dantec Hospital, Dakar, Senegal.
Seydi Abdoul BaLaboratory of Cytology, Cytogenetics and Reproductive Biology, Le Dantec Hospital, Dakar, Senegal.
Yacouba DiaLaboratory of Cytology, Cytogenetics and Reproductive Biology, Le Dantec Hospital, Dakar, Senegal.
Sidy KaJoliot Curie Institute, Le Dantec Hospital, Dakar, Senegal.
Babacar MbengueFaculty of Medicine, Pharmacy and Odontology, University Cheikh Anta Diop, Dakar, Senegal.
Alassane ThiamPasteur Institute of Dakar, Dakar, Senegal.
Oumar FayeLaboratory of Cytology, Cytogenetics and Reproductive Biology, Le Dantec Hospital, Dakar, Senegal.
Papa Amadou DiopFaculty of Medicine, Pharmacy and Odontology, University Cheikh Anta Diop, Dakar, Senegal.
Hagay SobolLaboratory of Molecular Oncogenetics, Paoli-Calmette Institute, Marseille, France.
Alioune DieyeFaculty of Medicine, Pharmacy and Odontology, University Cheikh Anta Diop, Dakar, Senegal.
Hôpital Aristide Le Dantec · SNCheikh Anta Diop University · SNInstitut Paoli-Calmettes · FRInstitut Pasteur de Dakar · SNYahoo (Spain) · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPathogenic variants associated with hereditary breast cancer have been reported for BRCA1 and BRCA2 (BRCA1/2) genes in patients from multiple ethnicities, but limited information is available from sub-Saharan African populations. We report a BRCA2 pathogenic variant in a Senegalese family with hereditary breast cancer.

methodsAn index case from a consanguineous family and nineteen healthy female relatives were recruited after informed consent. Along with this family, 14 other index cases with family history of breast cancer were also recruited. For the control populations we recruited 48 healthy women with no cancer diagnosis and 48 women diagnosed with sporadic breast cancer without family history. Genomic DNA was extracted from peripheral blood. All BRCA2 exons were amplified by PCR and sequenced. Sequences were compared to the BRCA2 GenBank reference sequence (NM_000059.3) using Alamut Software.

resultsWe identified a novel nonsense pathogenic variant c.5219 T > G; p.(Leu1740Ter) in exon 11 of BRCA2 in the index case. The pathogenic variant was also identified in three sisters and one daughter, but was absent in the controls and unrelated cases.

conclusionsThis is the first report of a novel BRCA2 pathogenic variant in a Senegalese family with hereditary breast cancer. This result confirms the diversity of hereditary breast cancer pathogenic variants across populations and extends our knowledge of genetic susceptibility to breast cancer in Africa.

Indexed as

ConsanguinityGenes, BRCA2Genetic Predisposition to DiseaseAdultAgedAged, 80 and overBreast NeoplasmsFemaleGerm-Line MutationHumansMiddle AgedSenegalSurvival AnalysisBRCA2 geneHereditary breast cancerSusceptibility

Identifiers

PMID31060517
PMCPMC6501405
OpenAlexW2947045745

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.