Evidence map›Paper›PMID 31059263›Full record

ArticleJournal of proteome research2019

Specific Proteomes of Hippocampal Regions CA2 and CA1 Reveal Proteins Linked to the Unique Physiology of Area CA2.

Kyle J Gerber, Eric B Dammer, Duc M Duong, Qiudong Deng, Serena M Dudek, Nicholas T Seyfried, John R Hepler

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

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  5. Global Protein Profiling in Processed Immunohistochemistry Tissue Sections.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kyle J GerberDepartment of Pharmacology and Chemical Biology, Rollins Research Center , Emory University School of Medicine , Atlanta , Georgia 30322 , United States.ORCID 0000-0003-0743-3039
Eric B DammerDepartment of Biochemistry , Emory University School of Medicine , Atlanta , Georgia 30322 , United States.
Duc M DuongDepartment of Biochemistry , Emory University School of Medicine , Atlanta , Georgia 30322 , United States.
Qiudong DengDepartment of Biochemistry , Emory University School of Medicine , Atlanta , Georgia 30322 , United States.
Serena M DudekNeurobiology Laboratory, National Institute of Environmental Health Sciences , National Institutes of Health , Research Triangle Park , North Carolina 27709 , United States.
Nicholas T SeyfriedDepartment of Biochemistry , Emory University School of Medicine , Atlanta , Georgia 30322 , United States.ORCID 0000-0002-4507-624X
John R HeplerDepartment of Pharmacology and Chemical Biology, Rollins Research Center , Emory University School of Medicine , Atlanta , Georgia 30322 , United States.ORCID 0000-0002-1090-2919
Emory University · USNational Institutes of Health · US

Funding

Mechanisms Of Synaptic Plasticity In The Adult And Developing Nervous SystemZIAES100221 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DUDEK, SERENA M · 2009 to 2025
$47.4M
Structure and Function of the G-alpha-i1:RGS14:H-Ras signaling complexR01NS037112 · NINDS · EMORY UNIVERSITY · PI HEPLER, JOHN R · 1998 to 2023
$7.2M
ENNCF - Viral Vector CoreP30NS055077 · NINDS · EMORY UNIVERSITY · PI LEVEY, ALLAN I · 2008 to 2018
$6.8M
Graduate Training in the Pharmacological StudiesT32GM008602 · NIGMS · EMORY UNIVERSITY · PI HALL, RANDY A. · 1996 to 2021
$5.1M
Synaptic Plasticity In The Adult And Developing NSZ01ES100221 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DUDEK, SERENA M · 2002 to 2008
$3.5M
Decoding the RGS14 Interactome/Signalosome in CA2 hippocampal neuronsR21NS087488 · NINDS · EMORY UNIVERSITY · PI HEPLER, JOHN R · 2015 to 2016
$426k
Defining signaling roles for RGS14 and rare human variants of RGS14 in the nuclei of hippocampal neuronsR21NS102652 · NINDS · EMORY UNIVERSITY · PI HEPLER, JOHN R · 2018 to 2019
$419k
RGS14:14-3-3 Complex Effect on Signaling in Hippocampal CA2 Synaptic PlasticityF31NS098648 · NINDS · EMORY UNIVERSITY · PI GERBER, KYLE JONATHAN · 2016 to 2018
$130k
Intramural NIH HHS Z01 ES100221NIGMS NIH HHS T32 GM008602NINDS NIH HHS F31 NS098648NINDS NIH HHS P30 NS055077NINDS NIH HHS R01 NS037112NINDS NIH HHS R21 NS087488NINDS NIH HHS R21 NS102652
6 · The paper itself

Abstract

The hippocampus is well established as an essential brain center for learning and memory. Within the hippocampus, recent studies show that area CA2 is important for social memory and is an anomaly compared to its better-understood neighboring region, CA1. Unlike CA1, CA2 displays a lack of typical synaptic plasticity, enhanced calcium buffering and extrusion, and resilience to cell death following injury. Although recent studies have identified multiple molecular markers of area CA2, the proteins that mediate the unique physiology, signaling, and resilience of this region are unknown. Using a transgenic GFP-reporter mouse line that expresses eGFP in CA2, we were able to perform targeted dissections of area CA2 and CA1 for proteomic analysis. We identified over 100 proteins with robustly enriched expression in area CA2 compared to CA1. Many of these proteins, including RGS14 and NECAB2, have already been shown to be enriched in CA2 and important for its function, while many more merit further study in the context of enhanced expression in this enigmatic brain region. Furthermore, we performed a comprehensive analysis of the entire data set (>2300 proteins) using a weighted protein co-expression network analysis. This identified eight distinct co-expressed patterns of protein co-enrichment associated with increased expression in area CA2 tissue (compared to CA1). The novel data set we present here reveals a specific CA2 hippocampal proteome, laying the groundwork for future studies and a deeper understanding of area CA2 and the proteins mediating its unique physiology and signaling.

Indexed as

AnimalsCA1 Region, HippocampalCA2 Region, HippocampalCalciumCalcium-Binding ProteinsEye ProteinsGene Expression RegulationHippocampusHumansMiceNeuronal PlasticityProtein Interaction MapsProteomeRGS ProteinsSignal TransductionCalciumCalcium-Binding ProteinsEye ProteinsNECAB2 protein, mouseProteomeRgs14 protein, mouseRGS ProteinsactinCA1CA2calciumhippocampusprotein−protein interaction networkproteomeRGS14synaptic plasticitysystems biology

Identifiers

PMID31059263
PMCPMC7039248
OpenAlexW2944035776

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.