Evidence map›Paper›PMID 31058542›Full record

ArticleJCO clinical cancer informatics2019

Validity of Natural Language Processing for Ascertainment of

Bernardo Haddock Lobo Goulart, Emily T Silgard, Christina S Baik, Aasthaa Bansal, Qin Sun, Eric B Durbin, Isaac Hands, Darshil Shah, Susanne M Arnold, Scott D Ramsey and 2 more

Open access · greenAbstract read
In one paragraph

Article in JCO clinical cancer informatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Bernardo Haddock Lobo GoulartFred Hutchinson Cancer Research Center, Seattle, WA.
Emily T SilgardFred Hutchinson Cancer Research Center, Seattle, WA.
Christina S BaikFred Hutchinson Cancer Research Center, Seattle, WA.
Aasthaa BansalUniversity of Washington, Seattle, WA.
Qin SunFred Hutchinson Cancer Research Center, Seattle, WA.
Eric B DurbinUniversity of Kentucky, Lexington, KY.
Isaac HandsUniversity of Kentucky, Lexington, KY.
Darshil ShahUniversity of Kentucky, Lexington, KY.
Susanne M ArnoldUniversity of Kentucky, Lexington, KY.
Scott D RamseyFred Hutchinson Cancer Research Center, Seattle, WA.
Ramakanth KavuluruUniversity of Kentucky, Lexington, KY.
Stephen M SchwartzFred Hutchinson Cancer Research Center, Seattle, WA.
Fred Hutch Cancer Center · USUniversity of Kentucky · USUniversity of Washington · US

Funding

University of Kentucky Markey Cancer Center Support Grant ECIA SupplementP30CA177558 · NCI · UNIVERSITY OF KENTUCKY · PI KATHLEEN L. O'CONNOR · 2013 to 2026
$38.3M
NCI NIH HHS P30 CA177558
6 · The paper itself

Abstract

purposeSEER registries do not report results of epidermal growth factor receptor (

methodsWe obtained 4,278 e-path reports from 1,634 patients who were diagnosed with stage IV nonsquamous NSCLC from September 1, 2011, to December 31, 2013, included in CSS. We used 855 CSS reports to train NLP systems for the ascertainment of

resultsNLP systems yielded internal validity metrics that ranged from 0.95 to 1.00 for

conclusionNLP is an internally valid method for the ascertainment of

Indexed as

MutationNatural Language ProcessingAdultAgedAlgorithmsAnaplastic Lymphoma KinaseCarcinoma, Non-Small-Cell LungDNA Mutational AnalysisErbB ReceptorsFemaleGenetic TestingHumansKentuckyLung NeoplasmsMachine LearningMaleALK protein, humanAnaplastic Lymphoma KinaseEGFR protein, humanErbB Receptors

Identifiers

PMID31058542
PMCPMC6874053
OpenAlexW2943007708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.