Evidence map›Paper›PMID 31057041›Full record

ReviewTranscription2019

Transcribe this way: Rap1 confers promoter directionality by repressing divergent transcription.

Andrew C K Wu, Folkert J Van Werven

Abstract readReview
In one paragraph

Review in Transcription, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Molecular models of bidirectional promoter regulation.Current opinion in structural biology · 2024
    Review
  2. Review
  3. Strand asymmetries across genomic processes.Computational and structural biotechnology journal · 2023
    Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Andrew C K Wua Cell Fate and Gene Regulation Laboratory , The Francis Crick Institute , London , UK.ORCID 0000-0002-2429-2496
Folkert J Van Wervena Cell Fate and Gene Regulation Laboratory , The Francis Crick Institute , London , UK.ORCID 0000-0002-6685-2084

Funding

Cancer Research UK 17576Wellcome Trust
6 · The paper itself

Abstract

In eukaryotes, divergent transcription is a major source of noncoding RNAs. Recent studies have uncovered that in yeast, the transcription factor Rap1 restricts transcription in the divergent direction and thereby controls promoter directionality. Here, we summarize these findings, propose regulatory principles, and discuss the implications for eukaryotic gene regulation.

Indexed as

Promoter Regions, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexTelomere-Binding ProteinsTranscription FactorsTranscription, GeneticRAP1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexTelomere-Binding ProteinsTranscription Factorsdirectionalitydivergentnoncoding RNApromoterRap1repressionsteric hindrancetranscription factoryeast

Identifiers

PMID31057041
PMCPMC6602560

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.