Evidence map›Paper›PMID 31056486›Full record

ArticleTicks and tick-borne diseases2019

Isolation and characterization of a Rickettsia from the ovary of a Western black-legged tick, Ixodes pacificus.

Maryam Alowaysi, Junyan Chen, Sierra Stark, Kristine Teague, Monique LaCourse, Joanna Proctor, Katie Vigil, Jeremy Corrigan, Aja Harding, Jinze Li and 2 more

Open access · greenAbstract read
In one paragraph

Article in Ticks and tick-borne diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  5. Characterization of a novel transitional groupInternational journal of systematic and evolutionary microbiology · 2021
    Article
  6. Article
  7. TheFrontiers in veterinary science · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Maryam AlowaysiDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Junyan ChenDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Sierra StarkDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Kristine TeagueDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Monique LaCourseDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Joanna ProctorDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Katie VigilDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Jeremy CorriganDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Aja HardingDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Jinze LiDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA.
Timothy KurttiDepartment of Entomology, University of Minnesota, St. Paul, MN, 55108, USA.
Jianmin ZhongDepartment of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA. Electronic address: jz15@humboldt.edu.
Cal Poly Humboldt · USUniversity of Minnesota · US

Funding

Symbiotic Rickettsia Species as a Model System for the Study of Folate BiosynthesR15AI099902 · NIAID · HUMBOLDT STATE UNIVERSITY · PI ZHONG, JIANMIN · 2012 to 2012
$354k
NIAID NIH HHS R15 AI099902
6 · The paper itself

Abstract

A rickettsial isolate was obtained from a partially engorged Ixodes pacificus female, which was collected from Humboldt County, California. The isolate was provisionally named Rickettsia endosymbiont Ixodes pacificus (REIP). The REIP isolate displayed the highest nucleotide sequence identity to Rickettsia species phylotype G021 in I. pacificus (99%, 99%, and 100% for ompA, 16S rRNA, and gltA, respectively), a bacterium that was previously identified in I. pacifiucs by PCR. Analysis of sequences from complete opening frames of five genes, 16S rRNA, gltA, ompA, ompB, and sca4, provided inference to the bacteria's classification among other Rickettsia species. The REIP isolate displayed 99.8%, 99.4%, 99.2%, 99.5%, and 99.6% nucleotide sequence identity for 16S rRNA, gltA, ompA, ompB, and sca4 gene, respectively, with genes of 'R. monacensis' str. IrR/Munich, indicating the REIP isolate is closely related to 'R. monacensis'. Our suggestion was further supported by phylogenetic analysis using concatenated sequences of 16S rRNA, gltA, ompA, ompB, and sca4 genes, concatenated sequences of dksA-xerC, mppA-purC, and rpmE-tRNA

Indexed as

AnimalsBacterial Typing TechniquesCaliforniaDNA, BacterialDNA, IntergenicFemaleIxodesMultilocus Sequence TypingOvaryPhylogenyRickettsiaRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialDNA, IntergenicRNA, Ribosomal, 16SIxodes pacificusMultilocus sequence typingMulti-spacer sequence typingPhylogenetic analysis‘Rickettsia monacensis’ str. Humboldt

Identifiers

PMID31056486
PMCPMC6550347
OpenAlexW2943601318

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.