Evidence map›Paper›PMID 31055784›Full record

ArticleAMB Express2019

Expression of benzoyl-CoA metabolism genes in the lignocellulolytic host Caldicellulosiruptor bescii.

Kyle Sander, Meredith Yeary, Kristina Mahan, Jason Whitham, Richard J Giannone, Steven D Brown, Miguel Rodriguez, David E Graham, Bertrand Hankoua

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. A Review on Bacterial Contribution to Lignocellulose Breakdown into Useful Bio-Products.International journal of environmental research and public health · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kyle SanderBredesen Center for Interdisciplinary Graduate Research and Education, University of Tennessee, Knoxville, TN, USA.ORCID http://orcid.org/0000-0002-5944-7822
Meredith YearyBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Kristina MahanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Jason WhithamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Richard J GiannoneChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Steven D BrownBredesen Center for Interdisciplinary Graduate Research and Education, University of Tennessee, Knoxville, TN, USA.
Miguel RodriguezBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
David E GrahamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Bertrand HankouaCollege of Agriculture, Science and Technology, Delaware State University, Dover, DE, USA. bhankoua@desu.edu.
Oak Ridge National Laboratory · USDelaware State University · USUniversity of Tennessee at Knoxville · US

Funding

Oak Ridge Institute for Science and Education ASTRO ProgramU.S. Department of Energy Bioenergy Research Center - BioEnergy Science Center (BESC)U.S. Department of Energy Higher Education Research ExperiencesU.S. Department of Energy Visiting Faculty Program
6 · The paper itself

Abstract

Genes responsible for the anaerobic catabolism of benzoate in the thermophilic archaeon Ferroglobus placidus were expressed in the thermophilic lignocellulose-degrading bacterium Caldicellulosiruptor bescii, as a first step to engineering this bacterium to degrade this lignin metabolite. The benzoyl-CoA ligase gene was expressed individually, and in combination with benzoyl-CoA reductase and a putative benzoate transporter. This effort also assessed heterologous expression from a synthetically designed operon whereby each coding sequence was proceeded by a unique C. bescii ribosome binding site sequence. The F. placidicus benzoyl-CoA ligase gene was expressed in C. bescii to produce a full-length protein with catalytic activity. A synthetic 6-gene operon encoding three enzymes involved in benzoate degradation was also successfully expressed in C. bescii as determined by RNA analysis, though the protein products of only four of the genes were detected. The discord between the mRNA and protein measurements, especially considering the two genes lacking apparent protein abundance, suggests variable effectiveness of the ribosome binding site sequences utilized in this synthetic operon. The engineered strains did not degrade benzoate. Although the heterologously expressed gene encoding benzoyl-CoA ligase yielded a protein that was catalytically active in vitro, expression in C. bescii of six benzoate catabolism-related genes combined in a synthetic operon yielded mixed results. More effective expression and in vivo activity might be brought about by validating and using different ribosome binding sites and different promoters. Expressing additional pathway components may alleviate any pathway inhibition and enhance benzoyl-CoA reductase activity.

Indexed as

AromaticBenzoyl-CoACaldicellulosiruptor besciiHeterologous expression

Identifiers

PMID31055784
PMCPMC6500515
OpenAlexW2947802249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.