Evidence map›Paper›PMID 31055637›Full record

ReviewCurrent genetics2019

Unraveling quiescence-specific repressive chromatin domains.

Sarah G Swygert, Toshio Tsukiyama

Abstract readReview
PubMed Publisher
In one paragraph

Review in Current genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Cellular quiescence in budding yeast.Yeast (Chichester, England) · 2021
    Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sarah G SwygertBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.ORCID http://orcid.org/0000-0002-0778-4624
Toshio TsukiyamaBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA. ttsukiya@fredhutch.org.

Funding

Chromosome Metabolism and Cancer Training GrantT32CA009657 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2020
$7.6M
MYC ONCOPROTEIN FUNCTIONR01CA057138 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2018
$4.9M
Mechanisms and functions of chromatin regulation for cell-cycle controlR01GM111428 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TSUKIYAMA, TOSHIO · 2015 to 2020
$2.4M
Foundation for the National Institutes of Health F32GM120962Foundation for the National Institutes of Health R01GM111428Foundation for the National Institutes of Health T32CA009657NCI NIH HHS R01 CA057138NCI NIH HHS T32 CA009657NIGMS NIH HHS R01 GM111428
6 · The paper itself

Abstract

Quiescence is a highly conserved inactive life stage in which the cell reversibly exits the cell cycle in response to external cues. Quiescence is essential for diverse processes such as the maintenance of adult stem cell stores, stress resistance, and longevity, and its misregulation has been implicated in cancer. Although the non-cycling nature of quiescent cells has made obtaining sufficient quantities of quiescent cells for study difficult, the development of a Saccharomyces cerevisiae model of quiescence has recently enabled detailed investigation into mechanisms underlying the quiescent state. Like their metazoan counterparts, quiescent budding yeast exhibit widespread transcriptional silencing and dramatic chromatin condensation. We have recently found that the structural maintenance of chromosomes (SMC) complex condensin binds throughout the quiescent budding yeast genome and induces the formation of large chromatin loop domains. In the absence of condensin, quiescent cell chromatin is decondensed and transcription is de-repressed. Here, we briefly discuss our findings in the larger context of the genome organization field.

Indexed as

Cell CycleResting Phase, Cell CycleAdenosine TriphosphatasesChromatinChromatin Assembly and DisassemblyDNA-Binding ProteinsGene Expression RegulationGenome-Wide Association StudyMultiprotein ComplexesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticAdenosine TriphosphatasesChromatincondensin complexesDNA-Binding ProteinsMultiprotein ComplexesSaccharomyces cerevisiae ProteinsChromatin compactionCIDsCohesinCondensinMicro-C XLQuiescenceTADs

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.