Evidence map›Paper›PMID 31053974›Full record

ArticleMicrobial ecology2020

Genetic Diversity of Cryphonectria hypovirus 1, a Biocontrol Agent of Chestnut Blight, in Croatia and Slovenia.

Ljiljana Krstin, Zorana Katanić, Jelena Repar, Marin Ježić, Ana Kobaš, Mirna Ćurković-Perica

Abstract read
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In one paragraph

Article in Microbial ecology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Molecular genetic variability ofFrontiers in microbiology · 2024
    Article
  5. Filling the Gap in Southern Europe-Diversity ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ljiljana KrstinDepartment of Biology, Josip Juraj Strossmayer University of Osijek, HR-31000, Osijek, Croatia.
Zorana KatanićDepartment of Biology, Josip Juraj Strossmayer University of Osijek, HR-31000, Osijek, Croatia.
Jelena ReparDivision of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia.
Marin JežićDepartment of Biology, Faculty of Science, University of Zagreb, HR-10000, Zagreb, Croatia.
Ana KobašDepartment of Biology, Josip Juraj Strossmayer University of Osijek, HR-31000, Osijek, Croatia.
Mirna Ćurković-PericaDepartment of Biology, Faculty of Science, University of Zagreb, HR-10000, Zagreb, Croatia. mirna.curkovic-perica@biol.pmf.hr.ORCID http://orcid.org/0000-0001-6592-6101
University of Osijek · HRUniversity of Zagreb · HRRuđer Bošković Institute · HR

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung IZ73Z0_152525/1Sveučilište Josipa Jurja Strossmayera u Osijeku IZIP-2016-54
6 · The paper itself

Abstract

Transmissible hypovirulence associated with Cryphonectria hypovirus 1 (CHV1) has been used for biological control of chestnut blight, devastating disease of chestnut caused by the fungus Cryphonectria parasitica. The main aims of this study were to provide molecular characterization of CHV1 from Croatia and Slovenia and to reveal its genetic variability, phylogeny, and diversification of populations. Fifty-one CHV1 haplotypes were detected among 54 partially sequenced CHV1 isolates, all belonging to Italian subtype (I). Diversity was mainly generated by point mutations while evidence of recombination was not found. The level of conservation over analyzed parts of ORF-A proteins p29 and p40 varied, but functional sites were highly conserved. Phylogenetic analysis revealed close relatedness and intermixing of Croatian and Slovenian CHV1 populations. Our CHV1 isolates were also related to Swiss and Bosnian hypoviruses supporting previously suggested course of CHV1 invasion in Europe. Overall, this study indicates that phylogeny of CHV1 subtype I in Europe is complex and characterized with frequent point mutations resulting in many closely related variants of the virus. Possible association between variations within CHV1 ORF-A and growth of the hypovirulent fungal isolates is tested and presented.

Indexed as

AscomycotaCroatiaFagaceaeFungal VirusesGenetic VariationPhylogenyPlant DiseasesSloveniaBiological controlCryphonectria hypovirus 1Genetic variabilityPhylogenetic analysisProtein conservation

Identifiers

PMID31053974
OpenAlexW2942626138

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.