Evidence map›Paper›PMID 31053739›Full record

ArticleMucosal immunology2019

Reducing IRF5 expression attenuates colitis in mice, but impairs the clearance of intestinal pathogens.

Surya P Pandey, Jie Yan, Jerrold R Turner, Clara Abraham

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Mucosal immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Surya P Pandey *Department of Internal Medicine, Yale University, New Haven, CT, 06510, USA.
Jie Yan *Department of Internal Medicine, Yale University, New Haven, CT, 06510, USA.
Jerrold R TurnerDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Clara AbrahamDepartment of Internal Medicine, Yale University, New Haven, CT, 06510, USA. clara.abraham@yale.edu.
Yale University · USBrigham and Women's Hospital · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAYNE I LENCER · 1986 to 2026
$32.4M
Yale Liver CenterP30DK034989 · NIDDK · YALE UNIVERSITY · PI YASUKO IWAKIRI · 1986 to 2026
$31.1M
Functional outcomes of inflammatory bowel disease associated variantsR01DK099097 · NIDDK · YALE UNIVERSITY · PI CLARA ABRAHAM · 2013 to 2026
$7.0M
Mechanisms Regulating Innate Immune ResponsesR01AI120369 · NIAID · YALE UNIVERSITY · PI ABRAHAM, CLARA · 2016 to 2020
$2.0M
NCATS NIH HHS UL1 TR001863NIAID NIH HHS R01 AI120369NIDDK NIH HHS P30 DK034854NIDDK NIH HHS P30 DK034989NIDDK NIH HHS R01 DK099097
6 · The paper itself

Abstract

IRF5 genetic variants leading to decreased IRF5 expression reduce risk for ulcerative colitis. However, how IRF5 regulates intestinal inflammation and contributes to the balance between defenses against intestinal pathogens and inflammation in vivo, and the cells mediating this balance, are not known. We found that deleting IRF5 in mice led to reduced intestinal inflammation in the T cell transfer colitis model, with reduced Th1 and Th17, and increased Th2 cytokines. However, with orally-administered invasive S. Typhimurium, IRF5

Indexed as

Gene Expression RegulationAnimalsBiomarkersColitisCytokinesDextran SulfateDisease Models, AnimalInterferon Regulatory FactorsIntestinal MucosaMacrophagesMiceReactive Oxygen SpeciesSignal TransductionBiomarkersCytokinesDextran SulfateInterferon Regulatory FactorsIrf5 protein, mouseReactive Oxygen Species

Identifiers

PMID31053739
PMCPMC6688861
OpenAlexW2942814520

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.