Evidence map›Paper›PMID 31053593›Full record

ArticleGenetics2019

Filamentation Regulatory Pathways Control Adhesion-Dependent Surface Responses in Yeast.

Jacky Chow, Izzy Starr, Sheida Jamalzadeh, Omar Muniz, Anuj Kumar, Omer Gokcumen, Denise M Ferkey, Paul J Cullen

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Sticking to the Subject: Multifunctionality in Microbial Adhesins.Journal of fungi (Basel, Switzerland) · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jacky ChowDepartment of Biological Sciences, State University of New York at the University at Buffalo, New York 14260-1300.
Izzy StarrDepartment of Biological Sciences, State University of New York at the University at Buffalo, New York 14260-1300.
Sheida JamalzadehDepartment of Chemical and Biological Engineering, State University of New York at the University at Buffalo, New York 14260-1300.
Omar MunizDepartment of Biological Sciences, State University of New York at the University at Buffalo, New York 14260-1300.
Anuj KumarDepartment of Molecular, Cell, and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109.ORCID 0000-0002-8923-297X
Omer GokcumenDepartment of Biological Sciences, State University of New York at the University at Buffalo, New York 14260-1300.ORCID 0000-0003-4371-679X
Denise M FerkeyDepartment of Biological Sciences, State University of New York at the University at Buffalo, New York 14260-1300.
Paul J CullenDepartment of Biological Sciences, State University of New York at the University at Buffalo, New York 14260-1300 pjcullen@buffalo.edu.ORCID 0000-0002-6703-1480
University at Buffalo, State University of New York · USUniversity of Michigan–Ann Arbor · US

Funding

Control of MAPK Signaling by Cell Polarity ProteinsR01GM098629 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CULLEN, PAUL JAMES · 2011 to 2024
$4.4M
Regulation of Candida albicans Pathogenesis by the Signaling Mucin Msb2R01DE022720 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CULLEN, PAUL JAMES, EDGERTON, MIRA · 2013 to 2017
$1.9M
Gap Junction-Mediated Regulation of Nociceptive Sensory SignalingR01DC015758 · NIDCD · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI FERKEY, DENISE MARIE · 2017 to 2021
$1.7M
NIDCD NIH HHS R01 DC015758NIDCR NIH HHS R01 DE022720NIGMS NIH HHS R01 GM098629
6 · The paper itself

Abstract

Signaling pathways can regulate biological responses by the transcriptional regulation of target genes. In yeast, multiple signaling pathways control filamentous growth, a morphogenetic response that occurs in many species including fungal pathogens. Here, we examine the role of signaling pathways that control filamentous growth in regulating adhesion-dependent surface responses, including mat formation and colony patterning. Expression profiling and mutant phenotype analysis showed that the major pathways that regulate filamentous growth [filamentous growth MAPK (fMAPK), RAS, retrograde (RTG), RIM101, RPD3, ELP, SNF1, and PHO85] also regulated mat formation and colony patterning. The chromatin remodeling complex, SAGA, also regulated these responses. We also show that the RAS and RTG pathways coregulated a common set of target genes, and that SAGA regulated target genes known to be controlled by the fMAPK, RAS, and RTG pathways. Analysis of surface growth-specific targets identified genes that respond to low oxygen, high temperature, and desiccation stresses. We also explore the question of why cells make adhesive contacts in colonies. Cell adhesion contacts mediated by the coregulated target and adhesion molecule, Flo11p, deterred entry into colonies by macroscopic predators and impacted colony temperature regulation. The identification of new regulators (

Indexed as

BiofilmsCell AdhesionGene Expression Regulation, FungalCyclin-Dependent KinasesHistone DeacetylasesHyphaeMAP Kinase Signaling SystemMembrane GlycoproteinsProtein Serine-Threonine Kinasesras ProteinsRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsVirulenceCyclin-Dependent KinasesFLO11 protein, S cerevisiaeHistone DeacetylasesMembrane GlycoproteinsPHO85 protein, S cerevisiaeProtein Serine-Threonine Kinasesras ProteinsRepressor ProteinsRIM101 protein, S cerevisiaeRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeSNF1-related protein kinasesTrans-Activatorsbiofilmcomplex colonyexpression profilingfungal pathogenesisinvasive growthMAPK pathwaysmatmicrobial predator–prey relationshipspseudohyphal growthsignaling networkstemperature control

Identifiers

PMID31053593
PMCPMC6614897
OpenAlexW2943165982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.