Evidence map›Paper›PMID 31050407›Full record

ArticleAnalytical chemistry2019

Label-Free, Visual Detection of Small Molecules Using Highly Target-Responsive Multimodule Split Aptamer Constructs.

Yingping Luo, Haixiang Yu, Obtin Alkhamis, Yingzhu Liu, Xinhui Lou, Boyang Yu, Yi Xiao

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
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  7. On the Rational Design of Cooperative Receptors.Annual review of biophysics · 2023
    Review
  8. Interpol Review of Drug Analysis 2019-2022.Forensic science international. Synergy · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Using Simple-Structured Split Aptamer for Gold Nanoparticle-based Colorimetric Detection of Estradiol.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2021
    Article
  15. Review
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yingping LuoDepartment of Chemistry and Biochemistry , Florida International University , 11200 SW Eighth Street , Miami , Florida 33199 , United States.
Haixiang YuDepartment of Chemistry and Biochemistry , Florida International University , 11200 SW Eighth Street , Miami , Florida 33199 , United States.
Obtin AlkhamisDepartment of Chemistry and Biochemistry , Florida International University , 11200 SW Eighth Street , Miami , Florida 33199 , United States.
Yingzhu LiuDepartment of Chemistry and Biochemistry , Florida International University , 11200 SW Eighth Street , Miami , Florida 33199 , United States.
Xinhui LouDepartment of Chemistry , Capital Normal University , Xisanhuan North Rd. 105 , Beijing , China , 100048.ORCID 0000-0001-6906-713X
Boyang YuState Key Laboratory of Natural Medicines, Jiangsu Key Laboratory of TCM Evaluation and Translational Research, Department of Complex Prescription of TCM , China Pharmaceutical University , Nanjing 211198 , People's Republic of China.
Yi XiaoDepartment of Chemistry and Biochemistry , Florida International University , 11200 SW Eighth Street , Miami , Florida 33199 , United States.ORCID 0000-0001-7278-9811
Florida International University · USChina Pharmaceutical University · CNCapital Normal University · CN

Funding

Aptamer-Based, Exonuclease-Amplified, Colorimetric, Onsite Screening of Methylenedioxypyrovalerone (MDPV) and Mephedrone in Oral FluidR15DA036821 · NIDA · FLORIDA INTERNATIONAL UNIVERSITY · PI XIAO, YI · 2015 to 2015
$337k
Molecular mechanisms of pathogen recognition by the Nod-like receptor NLRC4I01BX000167 · VA · IOWA CITY VA MEDICAL CENTER · PI SUTTERWALA, FAYYAZ S. · 2009 to 2012
–
BLRD VA I01 BX000167NIDA NIH HHS R15 DA036821
6 · The paper itself

Abstract

Colorimetric aptamer-based sensors offer a simple means of on-site or point-of-care analyte detection. However, these sensors are largely incapable of achieving naked-eye detection, because of the poor performance of the target-recognition and signal-reporting elements employed. To address this problem, we report a generalizable strategy for engineering novel multimodule split DNA constructs termed "CBSAzymes" that utilize a cooperative binding split aptamer (CBSA) as a highly target-responsive bioreceptor and a new, highly active split DNAzyme as an efficient signal reporter. CBSAzymes consist of two fragments that remain separate in the absence of target, but effectively assemble in the presence of the target to form a complex that catalyzes the oxidation of 2,2'-azino-bis(3-ethylbenzthiazoline)-6-sulfonic acid, developing a dark green color within 5 min. Such assay enables rapid, sensitive, and visual detection of small molecules, which has not been achieved with any previously reported split-aptamer-DNAzyme conjugates. In an initial demonstration, we generate a cocaine-binding CBSAzyme that enables naked-eye detection of cocaine at concentrations as low as 10 μM. Notably, CBSAzyme engineering is straightforward and generalizable. We demonstrate this by developing a methylenedioxypyrovalerone (MDPV)-binding CBSAzyme for visual detection of MDPV and 10 other synthetic cathinones at low micromolar concentrations, even in biological samples. Given that CBSAzyme-based assays are simple, label-free, rapid, robust, and instrument-free, we believe that such assays should be readily applicable for on-site visual detection of various important small molecules such as illicit drugs, medical biomarkers, and toxins in various sample matrices.

Indexed as

Aptamers, NucleotideBenzodioxolesBiosensing TechniquesCocaineColorimetryDNA, CatalyticProtein EngineeringPyrrolidinesSmall Molecule LibrariesSynthetic CathinoneAptamers, NucleotideBenzodioxolesCocaineDNA, CatalyticPyrrolidinesSmall Molecule LibrariesSynthetic Cathinone

Identifiers

PMID31050407
PMCPMC6615563
OpenAlexW2942662234

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.