Evidence map›Paper›PMID 31050011›Full record

ArticleMagnetic resonance in medicine2019

A GRAPPA algorithm for arbitrary 2D/3D non-Cartesian sampling trajectories with rapid calibration.

Tianrui Luo, Douglas C Noll, Jeffrey A Fessler, Jon-Fredrik Nielsen

Abstract read
In one paragraph

Article in Magnetic resonance in medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Focused Abbreviated Survey MRI Protocols for Brain and Spine Imaging.Radiographics : a review publication of the Radiological Society of North America, Inc · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. k-Space Domain Parallel Transmit Pulse Design.Magnetic resonance in medicine · 2021
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tianrui LuoDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan.
Douglas C NollDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan.
Jeffrey A FesslerDepartment of Electrical and Computer Engineering, University of Michigan, Ann Arbor, Michigan.
Jon-Fredrik NielsenDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan.

Funding

MRI Scanner for Functional Brain ImagingS10OD012240 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NOLL, DOUGLAS C · 2012 to 2012
$2.0M
Fast Functional MRI with Sparse Sampling and Model-Based ReconstructionR01EB023618 · NIBIB · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FESSLER, JEFFREY A, NOLL, DOUGLAS C · 2017 to 2020
$1.5M
Toward robust whole-brain 3D functional MRI at 3T with reduced signal loss artifactsR21AG061839 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NIELSEN, JON-FREDRIK · 2019 to 2020
$408k
Toward layer-specific BOLD fMRI in human cortex at 3T using 3D zoomed-EPI and smallip fast-recovery imagingR21EB019653 · NIBIB · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NIELSEN, JON-FREDRIK · 2015 to 2016
$401k
NIA NIH HHS R21 AG061839NIBIB NIH HHS R01 EB023618NIBIB NIH HHS R21 EB019653NIH HHS S10 OD012240
6 · The paper itself

Abstract

purposeGRAPPA is a popular reconstruction method for Cartesian parallel imaging, but is not easily extended to non-Cartesian sampling. We introduce a general and practical GRAPPA algorithm for arbitrary non-Cartesian imaging.

methodsWe formulate a general GRAPPA reconstruction by associating a unique kernel with each unsampled k-space location with a distinct constellation, that is, local sampling pattern. We calibrate these generalized kernels using the Fourier transform phase shift property applied to fully gridded or separately acquired Cartesian Autocalibration signal (ACS) data. To handle the resulting large number of different kernels, we introduce a fast calibration algorithm based on nonuniform FFT (NUFFT) and adoption of circulant ACS boundary conditions. We applied our method to retrospectively under-sampled rotated stack-of-stars/spirals in vivo datasets, and to a prospectively under-sampled rotated stack-of-spirals functional MRI acquisition with a finger-tapping task.

resultsWe reconstructed all datasets without performing any trajectory-specific manual adaptation of the method. For the retrospectively under-sampled experiments, our method achieved image quality (i.e., error and g-factor maps) comparable to conjugate gradient SENSE (cg-SENSE) and SPIRiT. Functional activation maps obtained from our method were in good agreement with those obtained using cg-SENSE, but required a shorter total reconstruction time (for the whole time-series): 3 minutes (proposed) vs 15 minutes (cg-SENSE).

conclusionsThis paper introduces a general 3D non-Cartesian GRAPPA that is fast enough for practical use on today's computers. It is a direct generalization of original GRAPPA to non-Cartesian scenarios. The method should be particularly useful in dynamic imaging where a large number of frames are reconstructed from a single set of ACS data.

Indexed as

AlgorithmsBrainCalibrationFourier AnalysisHumansImaging, Three-DimensionalMagnetic Resonance Imagingdynamic imagingg-factorGRAPPAnon-cartesian imagingnon-iterative reconstructionNUFFT

Identifiers

PMID31050011
PMCPMC6894481

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.