Evidence map›Paper›PMID 31049715›Full record

ArticleJournal of gastroenterology2019

Epitope peptides of Helicobacter pylori CagA antibodies from sera by whole-peptide mapping.

Shamshul Ansari, Junko Akada, Yuichi Matsuo, Seiji Shiota, Yoko Kudo, Tadayoshi Okimoto, Kazunari Murakami, Yoshio Yamaoka

Abstract read
In one paragraph

Article in Journal of gastroenterology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shamshul AnsariDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Idaigaoka, Hasama-machi, Yufu, Oita, 879-5593, Japan.
Junko AkadaDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Idaigaoka, Hasama-machi, Yufu, Oita, 879-5593, Japan.
Yuichi MatsuoDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Idaigaoka, Hasama-machi, Yufu, Oita, 879-5593, Japan.
Seiji ShiotaDepartment of General Medicine, Almeida Memorial Hospital, Oita, Japan.
Yoko KudoDepartment of Gastroenterology, Oita University Faculty of Medicine, Yufu, Japan.
Tadayoshi OkimotoDepartment of Gastroenterology, Oita University Faculty of Medicine, Yufu, Japan.
Kazunari MurakamiDepartment of Gastroenterology, Oita University Faculty of Medicine, Yufu, Japan.
Yoshio YamaokaDepartment of Environmental and Preventive Medicine, Oita University Faculty of Medicine, Idaigaoka, Hasama-machi, Yufu, Oita, 879-5593, Japan. yyamaoka@oita-u.ac.jp.ORCID http://orcid.org/0000-0002-1222-5819

Funding

REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
Ministry of Education, Culture, Sports, Science and Technology 16H05191Ministry of Education, Culture, Sports, Science and Technology 17K09353Ministry of Education, Culture, Sports, Science and Technology 18KK0266National Institutes of Health (NIH) DK62813NIDDK NIH HHS R01 DK062813
6 · The paper itself

Abstract

backgroundHelicobacter pylori CagA has been found to be immuno-dominant protein and utilized for the diagnosis of the infection with cagA-positive strains. It is important to characterize the peptide epitopes capable of detecting serum anti-CagA antibodies to understand CagA immunogenicity.

methodsSera from 171 Japanese patients were subjected for the epitope mapping study. Eighty seven peptides were designed from the CagA consensus sequence and were used for ELISA protocol to test the serum samples. The reacting anti-CagA IgG amounts to specific peptides were measured and compared.

resultsThe study revealed a strong reactivity of two peptides (c7-NNTEPIYAQVNKKKAGQAT and c8-AGQATSPEEPIYAQVAKKV) in H. pylori-infected group. Interestingly, these two peptides contained the well-known EPIYA-A and EPIYA-B region, respectively, which are two out of three CagA phosphorylation domains. Tyrosine-phosphorylation of these peptides reduced their reactivity in most sera. Moreover, additional peptides' mapping and chimeric-peptides' experiments indicated that the amino acids (QV and KK) accommodated in right-side flanking regions of both EPIYA-motifs were essential for their strong reactivity, whereas the third EPIYA-motif containing peptide (c12-GRSASPEPIYATIDFDEA) with differing flanking amino acids was not reactive in most cases.

conclusionsOur results suggest that the amino acid sequences constituted in the two reactive peptides are the important immunogenic regions of CagA which would be useful to develop next-generation peptide-based diagnostic assays.

Indexed as

AdultAmino Acid SequenceAntibodies, BacterialAntigens, BacterialAsian PeopleBacterial ProteinsEpitopesHelicobacter InfectionsHelicobacter pyloriHumansPeptide MappingAntibodies, BacterialAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriEpitopesCagAELISAHelicobacter pyloriIgGPeptide

Identifiers

PMID31049715
PMCPMC6824978

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.