Evidence map›Paper›PMID 31049640›Full record

ArticleDiabetologia2019

Genome-wide association study of type 2 diabetes in Africa.

Ji Chen, Meng Sun, Adebowale Adeyemo, Fraser Pirie, Tommy Carstensen, Cristina Pomilla, Ayo P Doumatey, Guanjie Chen, Elizabeth H Young, Manjinder Sandhu and 7 more

Abstract read
In one paragraph

Article in Diabetologia, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 5 syntheses or guidelines pooled it.

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  11. Phenotypic and Genetic Diversity in Diabetes Across Populations.The Journal of clinical endocrinology and metabolism · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Ji ChenWellcome Sanger Institute, Hinxton, Cambridge, UK.
Meng SunWellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK.
Adebowale AdeyemoCenter for Research on Genomics and Global Heath, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, USA.
Fraser PirieDepartment of Diabetes and Endocrinology, University of KwaZulu-Natal, Durban, 4013, South Africa.
Tommy CarstensenWellcome Sanger Institute, Hinxton, Cambridge, UK.
Cristina PomillaWellcome Sanger Institute, Hinxton, Cambridge, UK.
Ayo P DoumateyCenter for Research on Genomics and Global Heath, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, USA.
Guanjie ChenCenter for Research on Genomics and Global Heath, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, USA.
Elizabeth H YoungWellcome Sanger Institute, Hinxton, Cambridge, UK.
Manjinder SandhuWellcome Sanger Institute, Hinxton, Cambridge, UK.
Andrew P MorrisWellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK.
Inês BarrosoWellcome Sanger Institute, Hinxton, Cambridge, UK.
Mark I McCarthyWellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK.
Anubha MahajanWellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK. anubha@well.ox.ac.uk.
Eleanor WheelerWellcome Sanger Institute, Hinxton, Cambridge, UK. eleanor.wheeler@mrc-epid.cam.ac.uk.
Charles N RotimiCenter for Research on Genomics and Global Heath, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, USA. rotimic@mail.nih.gov.
Ayesha A MotalaDepartment of Diabetes and Endocrinology, University of KwaZulu-Natal, Durban, 4013, South Africa. motala@ukzn.ac.za.

Funding

Genetic epidemiology of complex diseasesZIAHG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2009 to 2025
$54.7M
Identifying variants causal for Type 2 Diabetes in Major human populationsU01DK085545 · NIDDK · UNIVERSITY OF OXFORD · PI CHAN, JULIANA CN, EBRAHIM, SHAH BRIAN · 2009 to 2013
$2.8M
The Impact of Human Gene Knockouts in Type 2 Diabetes and Related TraitsR01DK098032 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOEHNKE, MICHAEL L, FLANNICK, JASON · 2012 to 2015
$2.3M
Integrating genome-scale data to reveal causal mechanisms in type 2 diabetesU01DK105535 · NIDDK · UNIVERSITY OF OXFORD · PI GLOYN, ANNA LOUISE · 2015 to 2019
$1.7M
Intramural NIH HHS ZIA HG200362Medical Research Council G0601261Medical Research Council MR/K013491/1NHGRI NIH HHS ZIA HG200362NIDDK NIH HHS R01 DK098032NIDDK NIH HHS U01 DK085545NIDDK NIH HHS U01 DK105535Wellcome TrustWellcome Trust 090367Wellcome Trust 090532Wellcome Trust 098381Wellcome Trust 106130Wellcome Trust 203141Wellcome Trust WT206194
6 · The paper itself

Abstract

aims/hypothesisGenome-wide association studies (GWAS) for type 2 diabetes have uncovered >400 risk loci, primarily in populations of European and Asian ancestry. Here, we aimed to discover additional type 2 diabetes risk loci (including African-specific variants) and fine-map association signals by performing genetic analysis in African populations.

methodsWe conducted two type 2 diabetes genome-wide association studies in 4347 Africans from South Africa, Nigeria, Ghana and Kenya and meta-analysed both studies together. Likely causal variants were identified using fine-mapping approaches.

resultsThe most significantly associated variants mapped to the widely replicated type 2 diabetes risk locus near TCF7L2 (p = 5.3 × 10 CONCLUSIONS/

interpretationThese results demonstrate the value of performing GWAS in Africans, provide a resource to larger consortia for further discovery and fine-mapping and indicate that additional large-scale efforts in Africa are warranted to gain further insight in to the genetic architecture of type 2 diabetes.

Indexed as

Black PeopleDiabetes Mellitus, Type 2Genetic Predisposition to DiseaseGenome-Wide Association StudyGenotyping TechniquesHumansPolymorphism, Single NucleotideTranscription Factor 7-Like 2 ProteinWhite PeopleTranscription Factor 7-Like 2 ProteinAfricaEstablished lociFine-mappingGenome-wide association studyType 2 diabetes

Identifiers

PMID31049640
PMCPMC6560001

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.