ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019
A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed, 39 citations in OpenAlex.
- A comprehensive SPET-based linkage mapping for berry texture and defective seed development in grapevine.Frontiers in plant science · 2026Article
- GWAS identifies a molecular marker cluster associated with monoterpenoids in grapes.Horticulture research · 2025Article
- Genotyping-by-sequencing-based high-resolution mapping reveals a single candidate gene for the grapevine veraison locus Ver1.Plant physiology · 2024Article
- Enhancing grapevine breeding efficiency through genomic prediction and selection index.G3 (Bethesda, Md.) · 2024Article
- Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece.Genome biology and evolution · 2023Article
- Berry texture QTL and candidate gene analysis in grape (Horticulture research · 2023Article
- Basic leucine zipper geneHorticulture research · 2023Article
- Exploring genetic diversity and population structure of a large grapevine (Frontiers in plant science · 2023Article
- Candidate gene discovery ofFrontiers in plant science · 2023Article
- A high-density integrated map for grapevine based on three mapping populations genotyped by the Vitis18K SNP chip.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Low-Density Reference Fingerprinting SNP Dataset of CIMMYT Maize Lines for Quality Control and Genetic Diversity Analyses.Plants (Basel, Switzerland) · 2022Article
- Interest of phenomic prediction as an alternative to genomic prediction in grapevine.Plant methods · 2022Article
- Effect of In Vitro Culture of Long Shoot Tip on Variant Structure and Titer of Grapevine Viruses.Plants (Basel, Switzerland) · 2022Article
- A genome-wide association and prediction study in grapevine deciphers the genetic architecture of multiple traits and identifies genes under many new QTLs.G3 (Bethesda, Md.) · 2022Article
- Molecular Tools for Adapting Viticulture to Climate Change.Frontiers in plant science · 2021Review
- A High-Density Genetic Map Enables Genome Synteny and QTL Mapping of Vegetative Growth and Leaf Traits in Gardenia.Frontiers in genetics · 2021Article
- Novel stable QTLs identification for berry quality traits based on high-density genetic linkage map construction in table grape.BMC plant biology · 2020Article
- High-density genetic linkage map construction and cane cold hardiness QTL mapping for Vitis based on restriction site-associated DNA sequencing.BMC genomics · 2020Article
- Construction of a High-Density Genetic Map and Mapping of Firmness in Grapes (International journal of molecular sciences · 2020Article
- Resynthesis: Marker-Based Partial Reconstruction of Elite Genotypes in Clonally-Reproducing Plant Species.Frontiers in plant science · 2020Article
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Authors and funding
12 authors at 2 institutions in 1 country.
Funding
Abstract
key messageA half-diallel population involving five elite grapevine cultivars was generated and genotyped by GBS, and highly-informative segregation data was used to construct a high-density genetic map for Vitis vinifera L. Grapevine is one of the most relevant fruit crops in the world. Deeper genetic knowledge could assist modern grapevine breeding programs to develop new wine grape varieties able to face climate change effects. To assist in the rapid identification of markers for crop yield components, grape quality traits and adaptation potential, we generated a large Vitis vinifera L. population (N = 624) by crossing five red wine cultivars in a half-diallel scheme, which was subsequently sequenced by an efficient GBS procedure. A high number of fully informative genetic variants was detected using a novel mapping approach capable of reconstructing local haplotypes from adjacent biallelic SNPs, which were subsequently used to construct the densest consensus genetic map available for the cultivated grapevine to date. This 1378.3-cM map integrates 10 bi-parental consensus maps and orders 4437 markers in 3353 unique positions on 19 chromosomes. Markers are well distributed all along the grapevine reference genome, covering up to 98.8% of its genomic sequence. Additionally, a good agreement was observed between genetic and physical orders, adding confidence in the quality of this map. Collectively, our results pave the way for future genetic studies (such as fine QTL mapping) aimed to understand the complex relationship between genotypic and phenotypic variation in the cultivated grapevine. In addition, the method used (which efficiently delivers a high number of fully informative markers) could be of interest to other outbred organisms, notably perennial fruit crops.
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