Evidence map›Paper›PMID 31048915›Full record

ArticlePloS one2019

High-resolution cryo-EM structures of the E. coli hemolysin ClyA oligomers.

Wei Peng, Marcela de Souza Santos, Yang Li, Diana R Tomchick, Kim Orth

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Cryo-EM structure of detergent-boundbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Bacterial pore-forming toxins.Microbiology (Reading, England) · 2022
    Article
  10. Review
  11. Challenges and approaches to studying pore-forming proteins.Biochemical Society transactions · 2021
    Review
  12. Article
  13. Review
  14. Review
  15. Biological Nanopores: Engineering on Demand.Life (Basel, Switzerland) · 2021
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Wei PengDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, United States of America.
Marcela de Souza SantosDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, United States of America.
Yang LiDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, United States of America.
Diana R TomchickDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, United States of America.
Kim OrthDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, United States of America.ORCID 0000-0002-0678-7620
The University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · US

Funding

Proteostasis, AMPylation and the Unfolded Protein repsonse (UPR)R01GM115188 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ORTH, KIM · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM115188
6 · The paper itself

Abstract

Pore-forming proteins (PFPs) represent a functionally important protein family, that are found in organisms from viruses to humans. As a major branch of PFPs, bacteria pore-forming toxins (PFTs) permeabilize membranes and usually cause the death of target cells. E. coli hemolysin ClyA is the first member with the pore complex structure solved among α-PFTs, employing α-helices as transmembrane elements. ClyA is proposed to form pores composed of various numbers of protomers. With high-resolution cryo-EM structures, we observe that ClyA pore complexes can exist as newly confirmed oligomers of a tridecamer and a tetradecamer, at estimated resolutions of 3.2 Å and 4.3 Å, respectively. The 2.8 Å cryo-EM structure of a dodecamer dramatically improves the existing structural model. Structural analysis indicates that protomers from distinct oligomers resemble each other and neighboring protomers adopt a conserved interaction mode. We also show a stabilized intermediate state of ClyA during the transition process from soluble monomers to pore complexes. Unexpectedly, even without the formation of mature pore complexes, ClyA can permeabilize membranes and allow leakage of particles less than ~400 Daltons. In addition, we are the first to show that ClyA forms pore complexes in the presence of cholesterol within artificial liposomes. These findings provide new mechanistic insights into the dynamic process of pore assembly for the prototypical α-PFT ClyA.

Indexed as

Cell MembraneCryoelectron MicroscopyEscherichia coliEscherichia coli ProteinsHemolysin ProteinsLiposomesProtein MultimerizationEscherichia coli ProteinsHemolysin ProteinshlyE protein, E coliLiposomes

Identifiers

PMID31048915
PMCPMC6497250
OpenAlexW2917816601

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.