Evidence map›Paper›PMID 31048900›Full record

ArticlePLoS genetics2019

Variants in myelin regulatory factor (MYRF) cause autosomal dominant and syndromic nanophthalmos in humans and retinal degeneration in mice.

Sarah J Garnai, Michelle L Brinkmeier, Ben Emery, Tomas S Aleman, Louise C Pyle, Biliana Veleva-Rotse, Robert A Sisk, Frank W Rozsa, Ayse Bilge Ozel, Jun Z Li and 20 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03632239 (Reverse Phenotyping Core), which is not on this map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03632239 enrolling by invitationnot on this mapstarted 2020, after this paper: background citation

Reverse Phenotyping Core (RPC)

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2020 to 2028Enrolled1,000ConditionsHarboring of Unexpected Genetic Variant
3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. FOXP4 Variants Are Associated With Plateau Iris and Angle Closure Glaucoma.Investigative ophthalmology & visual science · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Frontiers in genetics · 2024
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Frontiers in genetics · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 8 institutions in 2 countries.

Sarah J GarnaiDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0002-0283-5437
Michelle L BrinkmeierDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
Ben EmeryJungers Center for Neurosciences Research, Department of Neurology, Oregon Health & Science University, Portland, OR, United States of America.
Tomas S AlemanThe Children's Hospital of Philadelphia, Philadelphia, PA, United States of America.
Louise C PyleDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, United States of America.ORCID 0000-0002-8933-9320
Biliana Veleva-RotseJungers Center for Neurosciences Research, Department of Neurology, Oregon Health & Science University, Portland, OR, United States of America.ORCID 0000-0002-7783-0112
Robert A SiskCincinnati Eye Institute, Cincinnati, Ohio, United States of America.
Frank W RozsaDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
Ayse Bilge OzelDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, United States of America.
Jun Z LiDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, United States of America.
Sayoko E MoroiDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
Steven M ArcherDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0002-5539-4129
Cheng-Mao LinDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0003-2409-9423
Sarah SheskeyDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0003-3394-4174
Laurel Wiinikka-BuesserDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
James EadieDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
Jill E UrquhartManchester Centre for Genomic Medicine, Manchester Academic Health Sciences Centre, Manchester University NHS Foundation Trust, St Mary's Hospital, Manchester, United Kingdom.
Graeme C M BlackManchester Centre for Genomic Medicine, Manchester Academic Health Sciences Centre, Manchester University NHS Foundation Trust, St Mary's Hospital, Manchester, United Kingdom.
Mohammad I OthmanDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
Michael BoehnkeDepartment of Biostatistics and Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0002-6442-7754
Scot A SullivanDean McGee Eye Institute, Department of Ophthalmology, University of Oklahoma, Oklahoma City, OK.
Gregory L SkutaDean McGee Eye Institute, Department of Ophthalmology, University of Oklahoma, Oklahoma City, OK.
Hemant S PawarDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
Alexander E KatzMedical Genomics and Metabolic Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, United States of America.ORCID 0000-0001-9706-9490
Laryssa A HurynOphthalmic Genetics and Visual Function Branch, National Eye Institute, National Institutes of Health, Bethesda, MD, United States of America.
Robert B HufnagelOphthalmic Genetics and Visual Function Branch, National Eye Institute, National Institutes of Health, Bethesda, MD, United States of America.
Genomic Ascertainment Cohort
Sally A CamperDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0001-8556-3379
Julia E RichardsDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.
Lev PrasovDepartment of Ophthalmology and Visual Sciences, W.K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0002-6635-1116
University of Michigan · USNational Institutes of Health · USChildren's Hospital of Philadelphia · USDean McGee Eye Institute · USOregon Health & Science University · USUniversity of Manchester · GBCincinnati Eye Institute · USHarvard University · US

Funding

VIVARIUM MODULEP30EY007003 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI David Antonetti · 1987 to 2026
$17.6M
Institutional Clinical and Translational Science AwardKL2TR001879 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI MEAGHER, EMMA ANNE · 2016 to 2025
$13.7M
Genomic and epigenomic mechanisms of pediatric ocular disordersZIAEY000565 · NEI · NATIONAL EYE INSTITUTE · PI HUFNAGEL, ROBERT · 2019 to 2024
$11.4M
Ophthalmic Genetics FellowshipZIEEY000477 · NEI · NATIONAL EYE INSTITUTE · PI HURYN, LARYSSA · 2009 to 2025
$7.2M
MOLECULAR GENETICS OF PRIMARY OPEN ANGLE GLAUCOMAR01EY011671 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARDS, JULIA E · 1998 to 2011
$5.0M
MOLECULAR GENETICS OF JUVENILE ONSET GLAUCOMAR01EY009580 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARDS, JULIA E · 1992 to 2005
$3.5M
Molecular Genetics of Primary Open-angle GlaucomaR56EY011671 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARDS, JULIA E · 2008 to 2008
$369k
Department of HealthNCATS NIH HHS KL2 TR001879NEI NIH HHS P30 EY007003NEI NIH HHS R01 EY009580NEI NIH HHS R01 EY011671NEI NIH HHS R56 EY011671
6 · The paper itself

Abstract

Nanophthalmos is a rare, potentially devastating eye condition characterized by small eyes with relatively normal anatomy, a high hyperopic refractive error, and frequent association with angle closure glaucoma and vision loss. The condition constitutes the extreme of hyperopia or farsightedness, a common refractive error that is associated with strabismus and amblyopia in children. NNO1 was the first mapped nanophthalmos locus. We used combined pooled exome sequencing and strong linkage data in the large family used to map this locus to identify a canonical splice site alteration upstream of the last exon of the gene encoding myelin regulatory factor (MYRF c.3376-1G>A), a membrane bound transcription factor that undergoes autoproteolytic cleavage for nuclear localization. This variant produced a stable RNA transcript, leading to a frameshift mutation p.Gly1126Valfs*31 in the C-terminus of the protein. In addition, we identified an early truncating MYRF frameshift mutation, c.769dupC (p.S264QfsX74), in a patient with extreme axial hyperopia and syndromic features. Myrf conditional knockout mice (CKO) developed depigmentation of the retinal pigment epithelium (RPE) and retinal degeneration supporting a role of this gene in retinal and RPE development. Furthermore, we demonstrated the reduced expression of Tmem98, another known nanophthalmos gene, in Myrf CKO mice, and the physical interaction of MYRF with TMEM98. Our study establishes MYRF as a nanophthalmos gene and uncovers a new pathway for eye growth and development.

Indexed as

AdultAnimalsChildChild, PreschoolExonsFamilyFemaleFrameshift MutationGenetic VariationGlaucoma, Angle-ClosureHumansHyperopiaMaleMembrane ProteinsMiceMice, Inbred C57BLMembrane ProteinsMyrf protein, humanRNA Splice SitesTMEM98 protein, humanTranscription Factors

Identifiers

PMID31048900
PMCPMC6527243
OpenAlexW2943152219

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.