Evidence map›Paper›PMID 31048506›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Derivation of simian tropic HIV-1 infectious clone reveals virus adaptation to a new host.

Fabian Schmidt, Brandon F Keele, Gregory Q Del Prete, Dennis Voronin, Christine M Fennessey, Steven Soll, Melissa Kane, Alice Raymond, Robert J Gifford, Vineet KewalRamani and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  3. Review
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  7. Article
  8. Review
  9. Frontiers in microbiology · 2021
    Article
  10. Review
  11. Article
  12. Journal of virology · 2019
    Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Fabian SchmidtLaboratory of Retrovirology, The Rockefeller University, New York, NY 10065.
Brandon F KeeleAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, MD 21702.
Gregory Q Del PreteAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, MD 21702.
Dennis VoroninLaboratory of Retrovirology, The Rockefeller University, New York, NY 10065.
Christine M FennesseyAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, MD 21702.
Steven SollLaboratory of Retrovirology, The Rockefeller University, New York, NY 10065.
Melissa KaneLaboratory of Retrovirology, The Rockefeller University, New York, NY 10065.
Alice RaymondLaboratory of Retrovirology, The Rockefeller University, New York, NY 10065.
Robert J GiffordMedical Research Council-University of Glasgow Centre for Virus Research, G12 8QQ Glasgow, United Kingdom.ORCID 0000-0003-4028-9884
Vineet KewalRamaniCenter for Cancer Research, National Cancer Institute, Frederick, MD 21702.
Jeffrey D LifsonAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, MD 21702.
Paul D BieniaszLaboratory of Retrovirology, The Rockefeller University, New York, NY 10065; pbieniasz@rockefeller.edu thatziio@rockefeller.edu.
Theodora HatziioannouLaboratory of Retrovirology, The Rockefeller University, New York, NY 10065; pbieniasz@rockefeller.edu thatziio@rockefeller.edu.ORCID 0000-0002-7889-0766
Rockefeller University · USFrederick National Laboratory for Cancer Research · USHoward Hughes Medical Institute · USMRC University of Glasgow Centre for Virus Research · GBNational Cancer Institute · US

Funding

Overcoming Host Restriction Factors to Develop Better Animal Models for HIV/AIDS.R01AI078788 · NIAID · ROCKEFELLER UNIVERSITY · PI HATZIIOANNOU, THEODORA · 2008 to 2021
$9.3M
Discovery and Mechanism of Antiretroviral FactorsR37AI064003 · NIAID · ROCKEFELLER UNIVERSITY · PI BIENIASZ, PAUL D. · 2011 to 2020
$4.9M
The Role of RISC Proteins in HIV-1 ReplicationZIABC011461 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KEWALRAMANI, VINEET N · 2012 to 2025
$2.9M
CCR NIH HHS HHSN261200800001CHoward Hughes Medical InstituteMedical Research Council MC_UU_12014/12NCI NIH HHS HHSN261200800001ENIAID NIH HHS R01 AI078788NIAID NIH HHS R37 AI064003
6 · The paper itself

Abstract

To replicate in a new host, lentiviruses must adapt to exploit required host factors and evade species-specific antiviral proteins. Understanding how host protein variation drives lentivirus adaptation allowed us to expand the host range of HIV-1 to pigtail macaques. We have previously derived a viral swarm (in the blood of infected animals) that can cause AIDS in this new host. To further exploit this reagent, we generated infectious molecular clones (IMCs) from the viral swarm. We identified clones with high replicative capacity in pigtail peripheral blood mononuclear cells (PBMC) in vitro and used in vivo replication to select an individual IMC, named stHIV-A19 (for simian tropic HIV-1 clone A19), which recapitulated the phenotype obtained with the viral swarm. Adaptation of HIV-1 in macaques led to the acquisition of amino acid changes in viral proteins, such as capsid (CA), that are rarely seen in HIV-1-infected humans. Using stHIV-A19, we show that these CA changes confer a partial resistance to the host cell inhibitor Mx2 from pigtail macaques, but that complete resistance is associated with a fitness defect. Adaptation of HIV-1 to a new host will lead to a more accurate animal model and a better understanding of virus-host interactions.

Indexed as

Adaptation, BiologicalDisease Models, AnimalHIV-1HIV InfectionsAnimalsCapsid ProteinsEvolution, MolecularHost SpecificityMacaca nemestrinaVirus ReplicationCapsid Proteinsanimal modelsHIV-1restriction factors

Identifiers

PMID31048506
PMCPMC6535013
OpenAlexW2943304996

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.