Evidence map›Paper›PMID 31045577›Full record

ArticleJCI insight2019

Differential transcriptome and development of human peripheral plasma cell subsets.

Swetha Garimalla, Doan C Nguyen, Jessica L Halliley, Christopher Tipton, Alexander F Rosenberg, Christopher F Fucile, Celia L Saney, Shuya Kyu, Denise Kaminski, Yu Qian and 4 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Up-regulation of proBDNF/p75Science advances · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Swetha GarimallaSchool of Biological Sciences, Georgia Institute of Technology, and.
Doan C NguyenDivision of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Emory University, Department of Medicine, Atlanta, Georgia, USA.
Jessica L HallileyFinger Lakes Community College, Rochester, New York, USA.
Christopher TiptonDivision of Rheumatology, Emory University, and.
Alexander F RosenbergDepartment of Microbiology and Informatics Institute, University of Alabama, Birmingham, Alabama, USA.
Christopher F FucileInformatics Institute, University of Alabama Birmingham, Alabama, USA.
Celia L SaneyDivision of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Emory University, Department of Medicine, Atlanta, Georgia, USA.
Shuya KyuDivision of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Emory University, Department of Medicine, Atlanta, Georgia, USA.
Denise KaminskiUniversity of Rochester, Rochester, New York, USA.
Yu QianJ. Craig Venter Institute, La Jolla, California, USA.
Richard H ScheuermannJ. Craig Venter Institute, La Jolla, California, USA.
Greg GibsonSchool of Biological Sciences, Georgia Institute of Technology, and.
Iñaki SanzDivision of Rheumatology, Emory University, and.
F Eun-Hyung LeeDivision of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Emory University, Department of Medicine, Atlanta, Georgia, USA.
Emory University · USGeorgia Institute of Technology · USJ. Craig Venter Institute · USUniversity of Alabama at Birmingham · USFinger Lakes Community College · USUniversity of Rochester · US

Funding

Regulation of Pathogenic Plasma Cells in Human SLEP01AI125180 · NIAID · EMORY UNIVERSITY · PI Ignacio E. Sanz · 2016 to 2026
$28.2M
Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
Virus-induced Cell Fate Decisions in Anti-Viral ImmunityU19AI109962 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LEE, FRANCES EUN-HYUNG · 2014 to 2018
$11.6M
Role of B Cells in Synovial Inflammation & LN Remodeling in RA ArthritisP01AI078907 · NIAID · UNIVERSITY OF ROCHESTER · PI WU, HULIN · 2010 to 2014
$10.8M
Translational Research Project Effector and Regulatory B cells in SLEU19AI056390 · NIAID · UNIVERSITY OF ROCHESTER · PI MOSMANN, TIM R. · 2003 to 2013
$8.9M
Molecular Mechanisms of Human Long-lived Plasma Cell Generation in the Bone Marrow and SpleenU01AI141993 · NIAID · EMORY UNIVERSITY · PI Frances Eun-Hyung Lee · 2019 to 2026
$5.7M
Transformative Computational Infrastructures for Cell-Based Biomarker DiagnosticsU01TR001801 · NCATS · J. CRAIG VENTER INSTITUTE, INC. · PI QIAN, YU, SCHEUERMANN, RICHARD H · 2016 to 2020
$4.0M
A Model System for the Study of Human B-cell ToleranceR37AI049660 · NIAID · UNIVERSITY OF ROCHESTER · PI SANZ, IGNACIO E. · 2010 to 2019
$3.7M
Understanding Survival of Human Bone Marrow Long-Lived Plasma CellsR01AI121252 · NIAID · EMORY UNIVERSITY · PI LEE, FRANCES EUN-HYUNG · 2016 to 2020
$2.7M
Pathogenesis of RSV disease in the ElderlyU01AI045969 · NIAID · UNIVERSITY OF ROCHESTER · PI WALSH, EDWARD E · 2004 to 2008
$2.5M
Immune Mechanisms of Severe RSV Disease- T Cell and Antibody ResponsesK23AI067501 · NIAID · UNIVERSITY OF ROCHESTER · PI LEE, FRANCES EUN-HYUNG · 2006 to 2010
$680k
IMMUNE FUNCTION AND BIODEFENSE IN CHILDREN. ELDERLY AND IMMUNOCOMPROMI-266050029N01AI050029 · NIAID · UNIVERSITY OF ROCHESTER · PI SANZ, IGNACIO E. · 2006 to 2006
–
NCATS NIH HHS U01 TR001801NCATS NIH HHS UL1 TR000454NIAID NIH HHS HHSN266200500030CNIAID NIH HHS K23 AI067501NIAID NIH HHS N01 AI050029NIAID NIH HHS P01 AI078907NIAID NIH HHS P01 AI125180NIAID NIH HHS R01 AI121252NIAID NIH HHS R37 AI049660NIAID NIH HHS U01 AI045969NIAID NIH HHS U01 AI141993NIAID NIH HHS U19 AI056390NIAID NIH HHS U19 AI109962
6 · The paper itself

Abstract

Human antibody-secreting cells (ASCs) triggered by immunization are globally recognized as CD19loCD38hiCD27hi. Yet, different vaccines give rise to antibody responses of different longevity, suggesting ASC populations are heterogeneous. We define circulating-ASC heterogeneity in vaccine responses using multicolor flow cytometry, morphology, VH repertoire, and RNA transcriptome analysis. We also tested differential survival using a human cell-free system that mimics the bone marrow (BM) microniche. In peripheral blood, we identified 3 CD19+ and 2 CD19- ASC subsets. All subsets contributed to the vaccine-specific responses and were characterized by in vivo proliferation and activation. The VH repertoire demonstrated strong oligoclonality with extensive interconnectivity among the 5 subsets and switched memory B cells. Transcriptome analysis showed separation of CD19+ and CD19- subsets that included pathways such as cell cycle, hypoxia, TNF-α, and unfolded protein response. They also demonstrated similar long-term in vitro survival after 48 days. In summary, vaccine-induced ASCs with different surface markers (CD19 and CD138) are derived from shared proliferative precursors yet express distinctive transcriptomes. Equal survival indicates that all ASC compartments are endowed with long-lived potential. Accordingly, in vivo survival of peripheral long-lived plasma cells may be determined in part by their homing and residence in the BM microniche.

Indexed as

TranscriptomeAdultAgedAntibody FormationAntibody-Producing CellsAntigens, CD19B-LymphocytesBone MarrowBone Marrow CellsFemaleHumansImmunizationImmunoglobulin GKineticsMaleMiddle AgedAntigens, CD19Immunoglobulin GAdaptive immunityImmunoglobulinsImmunology

Identifiers

PMID31045577
PMCPMC6538338
OpenAlexW2934645134

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.