Evidence map›Paper›PMID 31045292›Full record

ArticleHuman mutation2019

Biallelic variants in DNA2 cause microcephalic primordial dwarfism.

Žygimantė Tarnauskaitė, Louise S Bicknell, Joseph A Marsh, Jennie E Murray, David A Parry, Clare V Logan, Michael B Bober, Deepthi C de Silva, Angela L Duker, David Sillence and 4 more

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. TheGenes · 2022
    Article
  13. Review
  14. International journal of molecular sciences · 2021
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 5 countries.

Žygimantė TarnauskaitėMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Louise S BicknellMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Joseph A MarshMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Jennie E MurrayMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
David A ParryMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Clare V LoganMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Michael B BoberDivision of Genetics, Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Deepthi C de SilvaDepartment of Physiology, Faculty of Medicine, University of Kelaniya, Colombo, Sri Lanka.
Angela L DukerDivision of Genetics, Department of Pediatrics, Nemours/Alfred I. duPont Hospital for Children, Wilmington, Delaware.
David SillenceDiscipline of Genomic Medicine, Faculty of Medicine and Health, University of Sydney, Sydney, Australia.
Carol WiseSarah M. and Charles E. Seay Center for Musculoskeletal Research, Texas Scottish, Rite Hospital for Children, Dallas, Texas.
Andrew P JacksonMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-8739-2646
Olga MurinaMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Martin A M ReijnsMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-5048-2752
Institute of Genetics and Cancer · GBAlfred I. duPont Hospital for Children · USDunedin Public Hospital · NZTexas Scottish Rite Hospital for Children · USThe University of Sydney · AUUniversity of Kelaniya · LK

Funding

Medical Research Council MC_UU_00007/5Medical Research Council MR/M02122X/1Medical Research Council U127580972Wellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

Microcephalic primordial dwarfism (MPD) is a group of rare single-gene disorders characterized by the extreme reduction in brain and body size from early development onwards. Proteins encoded by MPD-associated genes play important roles in fundamental cellular processes, notably genome replication and repair. Here we report the identification of four MPD individuals with biallelic variants in DNA2, which encodes an adenosine triphosphate (ATP)-dependent helicase/nuclease involved in DNA replication and repair. We demonstrate that the two intronic variants (c.1764-38_1764-37ins(53) and c.74+4A>C) found in these individuals substantially impair DNA2 transcript splicing. Additionally, we identify a missense variant (c.1963A>G), affecting a residue of the ATP-dependent helicase domain that is highly conserved between humans and yeast, with the resulting substitution (p.Thr655Ala) predicted to directly impact ATP/ADP (adenosine diphosphate) binding by DNA2. Our findings support the pathogenicity of these variants as biallelic hypomorphic mutations, establishing DNA2 as an MPD disease gene.

Indexed as

Genetic VariationAdolescentAllelesDNA HelicasesDwarfismFemaleGenetic Predisposition to DiseaseHumansIntronsMaleMicrocephalyMiddle AgedModels, MolecularMutagenesis, InsertionalMutation, MissensePolymorphism, Single NucleotideDNA2 protein, humanDNA HelicasesDNA2DNA repairDNA replicationgrowthmicrocephalic primordial dwarfism

Identifiers

PMID31045292
PMCPMC6773220
OpenAlexW2942719449

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.