Evidence map›Paper›PMID 31044160›Full record

ArticleCommunications biology2019

The combination of neoantigen quality and T lymphocyte infiltrates identifies glioblastomas with the longest survival.

Jing Zhang, Francesca P Caruso, Jason K Sa, Sune Justesen, Do-Hyun Nam, Peter Sims, Michele Ceccarelli, Anna Lasorella, Antonio Iavarone

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Jing Zhang1Institute for Cancer Genetics, Columbia University Medical Center, New York, NY 10032 USA.ORCID 0000-0001-8549-3286
Francesca P Caruso2Department of Science and Technology, Universita' degli Studi del Sannio, 82100 Benevento, Italy.
Jason K Sa4Institute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.ORCID 0000-0002-3251-5004
Sune JustesenImmunitrack Aps, Rønnegade 4, 2100 Copenhagen East, Denmark.
Do-Hyun Nam4Institute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Peter Sims8Department of Systems Biology, Columbia University Medical Center, New York, NY 10032 USA.
Michele Ceccarelli2Department of Science and Technology, Universita' degli Studi del Sannio, 82100 Benevento, Italy.
Anna Lasorella1Institute for Cancer Genetics, Columbia University Medical Center, New York, NY 10032 USA.
Antonio Iavarone1Institute for Cancer Genetics, Columbia University Medical Center, New York, NY 10032 USA.
Columbia University Irving Medical Center · USSamsung Medical Center · KRUniversity of Sannio · ITCopenhagen Business School · DK

Funding

Topology of Cancer Evolution and HeterogeneityU54CA193313 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO, RABADAN, RAUL · 2015 to 2020
$10.4M
Single Cell Analysis of the Infiltrative Margins of Glioblastoma and Post Treatment RecurrenceR01NS103473 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JEFFREY N BRUCE, Peter Canoll · 2017 to 2026
$4.3M
Computational analysis of Human High Grade GliomasR01NS061776 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO · 2009 to 2013
$2.4M
Identification and modeling of driver genetic modules in glioblastomaR01CA179044 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO, RABADAN, RAUL · 2014 to 2018
$2.3M
The role of the LZTR1 ubiquitin ligase in stem cells and cancerR01CA190891 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO · 2015 to 2019
$1.9M
The mechanisms driving brain oncogenesis by FGFR-TACC gene fusionsR01CA178546 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO · 2014 to 2018
$1.8M
Mechanisms of ID2 regulation in gliomaR01CA239721 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LASORELLA, ANNA · 2019 to 2023
$1.8M
The Ureb-1 ubiquitin ligase in neural stem cells and cancerR01CA131126 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LASORELLA, ANNA · 2008 to 2012
$1.6M
NCI NIH HHS R01 CA131126NCI NIH HHS R01 CA178546NCI NIH HHS R01 CA179044NCI NIH HHS R01 CA190891NCI NIH HHS R01 CA239721NCI NIH HHS U54 CA193313NINDS NIH HHS R01 NS061776NINDS NIH HHS R01 NS103473
6 · The paper itself

Abstract

Glioblastoma (GBM) is resistant to multimodality therapeutic approaches. A high burden of tumor-specific mutant peptides (neoantigens) correlates with better survival and response to immunotherapies in selected solid tumors but how neoantigens impact clinical outcome in GBM remains unclear. Here, we exploit the similarity between tumor neoantigens and infectious disease-derived immune epitopes and apply a neoantigen fitness model for identifying high-quality neoantigens in a human pan-glioma dataset. We find that the neoantigen quality fitness model stratifies GBM patients with more favorable clinical outcome and, together with CD8

Indexed as

Amino Acid SequenceAntigens, NeoplasmBrain NeoplasmsCohort StudiesEpitopesGene OntologyGlioblastomaHLA AntigensHumansInhibitory Concentration 50Kaplan-Meier EstimateLymphocytes, Tumor-InfiltratingModels, ImmunologicalOligopeptidesPrognosisT-Cell Antigen Receptor SpecificityAntigens, NeoplasmEpitopesHLA AntigensOligopeptidesCNS cancerTumour immunology

Identifiers

PMID31044160
PMCPMC6478916
OpenAlexW2941709580

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.