Evidence map›Paper›PMID 31043755›Full record

ArticleNature genetics2019

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.

David J Bertioli, Jerry Jenkins, Josh Clevenger, Olga Dudchenko, Dongying Gao, Guillermo Seijo, Soraya C M Leal-Bertioli, Longhui Ren, Andrew D Farmer, Manish K Pandey and 40 more

Abstract read
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In one paragraph

Article in Nature genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 371 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
371citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

371 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  9. Genome-Wide Identification of theInternational journal of molecular sciences · 2026
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  19. Genome-Wide Analysis and Expression Profiles ofInternational journal of molecular sciences · 2026
    Article
  20. Article

311 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

50 authors.

David J BertioliCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA. bertioli@uga.edu.ORCID http://orcid.org/0000-0003-0294-7284
Jerry JenkinsHudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0002-7943-3997
Josh ClevengerCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Olga DudchenkoThe Center for Genome Architecture, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-9163-9544
Dongying GaoCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Guillermo SeijoInstituto de Botánica del Nordeste (CONICET-UNNE), Corrientes, Argentina.
Soraya C M Leal-BertioliCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Longhui RenInterdepartmental Genetics Graduate Program, Iowa State University, Ames, IA, USA.
Andrew D FarmerNational Center for Genome Resources, Santa Fe, NM, USA.
Manish K PandeyCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID http://orcid.org/0000-0002-4101-6530
Sergio S SamolukInstituto de Botánica del Nordeste (CONICET-UNNE), Corrientes, Argentina.
Brian AbernathyCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Gaurav AgarwalDepartment of Plant Pathology, University of Georgia, Tifton, GA, USA.
Carolina Ballén-TabordaInstitute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA.
Connor CameronNational Center for Genome Resources, Santa Fe, NM, USA.
Jacqueline CampbellDepartment of Computer Science, Iowa State University, Ames, IA, USA.ORCID http://orcid.org/0000-0003-2787-3955
Carolina ChavarroCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Annapurna ChitikineniCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Ye ChuDepartment of Horticulture, University of Georgia, Tifton, GA, USA.
Sudhansu DashNational Center for Genome Resources, Santa Fe, NM, USA.
Moaine El BaidouriUMR5096, Laboratoire Génome et Développement des Plantes, CNRS, Perpignan, France.
Baozhu GuoCrop Protection and Management Research Unit, US Department of Agriculture, Agricultural Research Service, Tifton, GA, USA.
Wei HuangDepartment of Computer Science, Iowa State University, Ames, IA, USA.
Kyung Do KimCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Walid KoraniCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0001-5372-2240
Sophie LancianoUMR5096, Laboratoire Génome et Développement des Plantes, Université de Perpignan, Perpignan, France.
Christopher G LuiThe Center for Genome Architecture, Baylor College of Medicine, Houston, TX, USA.
Marie MirouzeUMR5096, Laboratoire Génome et Développement des Plantes, Université de Perpignan, Perpignan, France.ORCID http://orcid.org/0000-0002-0514-1270
Márcio C MoretzsohnEmbrapa Genetic Resources and Biotechnology, Brasília, Brazil.
Melanie PhamThe Center for Genome Architecture, Baylor College of Medicine, Houston, TX, USA.
Jin Hee ShinCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Kenta ShirasawaDepartment of Frontier Research and Development, Kazusa DNA Research Institute, Kisarazu, Japan.ORCID http://orcid.org/0000-0001-7880-6221
Senjuti SinharoyNational Institute of Plant Genome Research, New Delhi, India.
Avinash SreedasyamHudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0001-7336-7012
Nathan T WeeksCorn Insects and Crop Genetics Research Unit, US Department of Agriculture Agricultural Research Service, Ames, IA, USA.ORCID http://orcid.org/0000-0002-4085-6028
Xinyou ZhangHenan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Industrial Crops Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Zheng ZhengHenan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Industrial Crops Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Ziqi SunHenan Provincial Key Laboratory for Genetic Improvement of Oil Crops, Industrial Crops Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou, China.
Lutz FroenickeGenome Center, University of California, Davis, Davis, CA, USA.
Erez L AidenThe Center for Genome Architecture, Baylor College of Medicine, Houston, TX, USA.
Richard MichelmoreGenome Center, University of California, Davis, Davis, CA, USA.
Rajeev K VarshneyCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID http://orcid.org/0000-0002-4562-9131
C Corley HolbrookCrop Genetics and Breeding Research Unit, US Department of Agriculture Agricultural Research Service, Tifton, GA, USA.
Ethalinda K S CannonDepartment of Computer Science, Iowa State University, Ames, IA, USA.ORCID http://orcid.org/0000-0002-0678-8754
Brian E SchefflerGenomics and Bioinformatics Research Unit, US Department of Agriculture Agricultural Research Service, Stoneville, MS, USA.ORCID http://orcid.org/0000-0003-1968-8952
Jane GrimwoodHudsonAlpha Institute of Biotechnology, Huntsville, AL, USA.
Peggy Ozias-AkinsInstitute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, USA.
Steven B CannonCorn Insects and Crop Genetics Research Unit, US Department of Agriculture Agricultural Research Service, Ames, IA, USA.ORCID http://orcid.org/0000-0003-2777-8034
Scott A JacksonCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA. sjackson@uga.edu.ORCID http://orcid.org/0000-0002-3172-1607
Jeremy SchmutzHudsonAlpha Institute of Biotechnology, Huntsville, AL, USA. jschmutz@hudsonalpha.org.ORCID http://orcid.org/0000-0001-8062-9172

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Like many other crops, the cultivated peanut (Arachis hypogaea L.) is of hybrid origin and has a polyploid genome that contains essentially complete sets of chromosomes from two ancestral species. Here we report the genome sequence of peanut and show that after its polyploid origin, the genome has evolved through mobile-element activity, deletions and by the flow of genetic information between corresponding ancestral chromosomes (that is, homeologous recombination). Uniformity of patterns of homeologous recombination at the ends of chromosomes favors a single origin for cultivated peanut and its wild counterpart A. monticola. However, through much of the genome, homeologous recombination has created diversity. Using new polyploid hybrids made from the ancestral species, we show how this can generate phenotypic changes such as spontaneous changes in the color of the flowers. We suggest that diversity generated by these genetic mechanisms helped to favor the domestication of the polyploid A. hypogaea over other diploid Arachis species cultivated by humans.

Indexed as

ArachisArgentinaChromosomes, PlantCrops, AgriculturalDNA MethylationDNA, PlantDomesticationEvolution, MolecularGene Expression Regulation, PlantGenetic VariationGenome, PlantHybridization, GeneticPhenotypePolyploidyRecombination, GeneticSpecies SpecificityDNA, Plant

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.