Evidence map›Paper›PMID 31043597›Full record

Trial reportNature communications2019

Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders.

George B Saffouri, Robin R Shields-Cutler, Jun Chen, Yi Yang, Heather R Lekatz, Vanessa L Hale, Janice M Cho, Eric J Battaglioli, Yogesh Bhattarai, Kevin J Thompson and 14 more

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 157 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
157citing papers in PubMed, 3 pooled it
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

157 citing papers in PubMed, 3 syntheses or guidelines pooled it, 304 citations in OpenAlex.

  1. Pooled it
  2. Microbiota in Autism Spectrum Disorder: A Systematic Review.International journal of molecular sciences · 2023
    Pooled it
  3. Guideline
  4. Trial
  5. Trial
  6. Trial
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Trending ileal microbiome dysbiosis over time as an early assessment of intestinal transplant rejection risk.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review

97 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 2 countries.

George B SaffouriDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
Robin R Shields-CutlerBioTechnology Institute, College of Biological Sciences, University of Minnesota, Minneapolis, MN, 55455, USA.
Jun ChenDivision of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, 55902, USA.
Yi YangComputational and Systems Medicine Section of the Department of Surgery and Cancer, Imperial College, (London), UK.
Heather R LekatzDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
Vanessa L HaleDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, OH, 43210, USA.
Janice M ChoDivision of Internal Medicine, Mayo Clinic, Rochester, MN, 55902, USA.
Eric J BattaglioliDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
Yogesh BhattaraiDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
Kevin J ThompsonDivision of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, 55902, USA.
Krishna K KalariDivision of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, 55902, USA.
Gaurav BeheraDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
Jonathan C BerryDivision of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55902, USA.
Stephanie A PetersDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
Robin PatelDivision of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55902, USA.
Audrey N SchuetzDivision of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, 55902, USA.
Jeremiah J FaithDepartment of Genetics and Genomic Sciences, Medicine, and Clinical Immunology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Michael CamilleriDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.
Justin L SonnenburgDepartment of Microbiology and Immunology, Stanford University, Stanford, CA, 94305, USA.
Gianrico FarrugiaDivision of Gastroenterology, Mayo Clinic, Jacksonville, FL, 32224, USA.
Jonathan R SwannComputational and Systems Medicine Section of the Department of Surgery and Cancer, Imperial College, (London), UK.ORCID http://orcid.org/0000-0002-6485-4529
Madhusudan GroverDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA.ORCID http://orcid.org/0000-0001-5092-0831
Dan KnightsBioTechnology Institute, College of Biological Sciences, University of Minnesota, Minneapolis, MN, 55455, USA.
Purna C KashyapDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55902, USA. kashyap.purna@mayo.edu.ORCID http://orcid.org/0000-0002-2851-2388
Mayo Clinic in Arizona · USMayo Clinic in Florida · USImperial College London · GBUniversity of Minnesota · USIcahn School of Medicine at Mount Sinai · USMayo Clinic · USStanford University · USThe Ohio State University · US

Funding

PILOT AND FEASIBILTY PROGRAMP30DK084567 · NIDDK · MAYO CLINIC ROCHESTER · PI Nicholas F. LaRusso · 2009 to 2026
$22.2M
Impact of Diet on Intestinal Microbiota-Host DynamicsR01DK085025 · NIDDK · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 2010 to 2026
$6.4M
Mechanisms of alteration of GI physiology by gut microbesR01DK114007 · NIDDK · MAYO CLINIC ROCHESTER · PI Purna C Kashyap · 2017 to 2026
$4.7M
Genetic Control and Ileo-Colonic Mucosal Expression of Bile Acid-Related Mechanisms in Irritable Bowel Syndrome-DiarrheaR01DK115950 · NIDDK · MAYO CLINIC ROCHESTER · PI CAMILLERI, MICHAEL L. · 2018 to 2021
$1.8M
"Barrier function alterations in post-infectious irritable bowel syndrome"K23DK103911 · NIDDK · MAYO CLINIC ROCHESTER · PI GROVER, MADHUSUDAN · 2015 to 2019
$804k
Mechanisms of alteration of gastrointestinal physiology by gut microbesR03DK111850 · NIDDK · MAYO CLINIC ROCHESTER · PI KASHYAP, PURNA C · 2017 to 2018
$159k
NIDDK NIH HHS K23 DK103911NIDDK NIH HHS P30 DK084567NIDDK NIH HHS R01 DK085025NIDDK NIH HHS R01 DK114007NIDDK NIH HHS R01 DK115950NIDDK NIH HHS R03 DK111850
6 · The paper itself

Abstract

Small intestinal bacterial overgrowth (SIBO) has been implicated in symptoms associated with functional gastrointestinal disorders (FGIDs), though mechanisms remain poorly defined and treatment involves non-specific antibiotics. Here we show that SIBO based on duodenal aspirate culture reflects an overgrowth of anaerobes, does not correspond with patient symptoms, and may be a result of dietary preferences. Small intestinal microbial composition, on the other hand, is significantly altered in symptomatic patients and does not correspond with aspirate culture results. In a pilot interventional study we found that switching from a high fiber diet to a low fiber, high simple sugar diet triggered FGID-related symptoms and decreased small intestinal microbial diversity while increasing small intestinal permeability. Our findings demonstrate that characterizing small intestinal microbiomes in patients with gastrointestinal symptoms may allow a more targeted antibacterial or a diet-based approach to treatment.

Indexed as

AdolescentAdultAgedAged, 80 and overAnti-Bacterial AgentsDietary FiberDietary SugarsDNA, BacterialDysbiosisFemaleGastrointestinal DiseasesGastrointestinal MicrobiomeHealthy VolunteersHumansIntestinal MucosaIntestine, SmallAnti-Bacterial AgentsDietary FiberDietary SugarsDNA, Bacterial

Identifiers

PMID31043597
PMCPMC6494866
OpenAlexW2943495289

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.