Evidence map›Paper›PMID 31042289›Full record

ArticleThe Journal of clinical endocrinology and metabolism2019

Exome Sequencing of a Primary Ovarian Insufficiency Cohort Reveals Common Molecular Etiologies for a Spectrum of Disease.

Angad Jolly, Yavuz Bayram, Serap Turan, Zehra Aycan, Tulay Tos, Zehra Yavas Abali, Bulent Hacihamdioglu, Zeynep Hande Coban Akdemir, Hadia Hijazi, Serpil Bas and 21 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical endocrinology and metabolism, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 75 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Human reproduction open · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Premature ovarian insufficiency.Nature reviews. Disease primers · 2024
    Review
  13. Genetic insights into the complexity of premature ovarian insufficiency.Reproductive biology and endocrinology : RB&E · 2024
    Review
  14. A Human HomozygousGenes · 2024
    Article
  15. Article
  16. DigenicHeliyon · 2024
    Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 11 institutions in 4 countries.

Angad JollyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Yavuz BayramDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Serap TuranDepartment of Pediatric Endocrinology and Diabetes, Marmara University School of Medicine, Istanbul, Turkey.
Zehra AycanDepartment of Pediatric Endocrinology, Sami Ulus Children's Hospital, Ankara, Turkey.
Tulay TosDepartment of Medical Genetics, Sami Ulus Children's Hospital, Ankara, Turkey.
Zehra Yavas AbaliDepartment of Pediatric Endocrinology, İstanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Bulent HacihamdiogluDepartment of Pediatric Endocrinology, Istinye University, Istanbul, Turkey.
Zeynep Hande Coban AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Hadia HijaziDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Serpil BasDepartment of Pediatric Endocrinology and Diabetes, Marmara University School of Medicine, Istanbul, Turkey.
Zeynep AtayDepartment of Pediatric Endocrinology and Diabetes, Marmara University School of Medicine, Istanbul, Turkey.
Tulay GuranDepartment of Pediatric Endocrinology and Diabetes, Marmara University School of Medicine, Istanbul, Turkey.
Saygin AbaliDepartment of Pediatric Endocrinology and Diabetes, Marmara University School of Medicine, Istanbul, Turkey.
Firdevs BasDepartment of Pediatric Endocrinology, İstanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Feyza DarendelilerDepartment of Pediatric Endocrinology, İstanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Roberto ColomboCenter for the Study of Rare Inherited Diseases (CeSMER), Niguarda Ca' Granda Metropolitan Hospital, Milan, Italy.
Tahsin Stefan BarakatDepartment of Clinical Genetics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.
Tuula RinneDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands.
Janson J WhiteDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Gozde YesilDepartment of Medical Genetics, Bezmialem University, Istanbul, Turkey.
Alper GezdiriciDepartment of Medical Genetics, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey.
Elif Yilmaz GulecDepartment of Medical Genetics, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey.
Ender KaracaDepartment of Genetics, University of Alabama at Birmingham, Birmingham, Alabama.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Sukran PoyrazogluDepartment of Pediatric Endocrinology, İstanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Abdullah BereketDepartment of Pediatric Endocrinology and Diabetes, Marmara University School of Medicine, Istanbul, Turkey.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Baylor College of Medicine · USMarmara University · TRIstanbul University · TRDr Sami Ulus Çocuk Sağlığı ve Hastalıkları Eğitim ve Araştırma Hastanesi · TRİstanbul Kanuni Sultan Süleyman Eğitim ve Araştırma Hastanesi · TRAgostino Gemelli University Polyclinic · ITBezmiâlem Vakıf Üniversitesi · TRErasmus MC · NLIstinye University · TRRadboud University Nijmegen · NLUniversity of Alabama at Birmingham · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
NHGRI NIH HHS K08 HG008986NHGRI NIH HHS U54 HG003273NHGRI NIH HHS UM1 HG006542NIGMS NIH HHS T32 GM008307NINDS NIH HHS R35 NS105078
6 · The paper itself

Abstract

contextPrimary ovarian insufficiency (POI) encompasses a spectrum of premature menopause, including both primary and secondary amenorrhea. For 75% to 90% of individuals with hypergonadotropic hypogonadism presenting as POI, the molecular etiology is unknown. Common etiologies include chromosomal abnormalities, environmental factors, and congenital disorders affecting ovarian development and function, as well as syndromic and nonsyndromic single gene disorders suggesting POI represents a complex trait.

objectiveTo characterize the contribution of known disease genes to POI and identify molecular etiologies and biological underpinnings of POI. DESIGN, SETTING, AND

participantsWe applied exome sequencing (ES) and family-based genomics to 42 affected female individuals from 36 unrelated Turkish families, including 31 with reported parental consanguinity.

resultsThis analysis identified likely damaging, potentially contributing variants and molecular diagnoses in 16 families (44%), including 11 families with likely damaging variants in known genes and five families with predicted deleterious variants in disease genes (IGSF10, MND1, MRPS22, and SOHLH1) not previously associated with POI. Of the 16 families, 2 (13%) had evidence for potentially pathogenic variants at more than one locus. Absence of heterozygosity consistent with identity-by-descent mediated recessive disease burden contributes to molecular diagnosis in 15 of 16 (94%) families. GeneMatcher allowed identification of additional families from diverse genetic backgrounds.

conclusionsES analysis of a POI cohort further characterized locus heterogeneity, reaffirmed the association of genes integral to meiotic recombination, demonstrated the likely contribution of genes involved in hypothalamic development, and documented multilocus pathogenic variation suggesting the potential for oligogenic inheritance contributing to the development of POI.

Indexed as

Exome SequencingCell Cycle ProteinsCohort StudiesDNA-Binding ProteinsDNA HelicasesFemaleGene FrequencyHumansHypogonadismImmunoglobulinsMinichromosome Maintenance ProteinsPrimary Ovarian InsufficiencyCell Cycle ProteinsCHD7 protein, humanDNA-Binding ProteinsDNA HelicasesIGSF10 protein, humanImmunoglobulinsMCM9 protein, humanMinichromosome Maintenance ProteinsMND1 protein, human

Identifiers

PMID31042289
PMCPMC6563799
OpenAlexW2943057292

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.