Evidence map›Paper›PMID 31041913›Full record

ArticleActa crystallographica. Section A, Foundations and advances2019

A space for lattice representation and clustering.

Lawrence C Andrews, Herbert J Bernstein, Nicholas K Sauter

Abstract read
In one paragraph

Article in Acta crystallographica. Section A, Foundations and advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Approximating lattice similarity.Acta crystallographica. Section A, Foundations and advances · 2023
    Article
  2. Geographic style maps for two-dimensional lattices.Acta crystallographica. Section A, Foundations and advances · 2023
    Article
  3. Generating random unit cells.Journal of applied crystallography · 2022
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Lawrence C AndrewsRonin Institute, 9515 NE 137th Street, Kirkland, WA 98034-1820, USA.
Herbert J BernsteinRochester Institute of Technology, c/o NSLS-II, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Nicholas K SauterLawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
DIALS: New Computational Methods to Enable Challenging Crystallographic ExperimentsR01GM117126 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2016 to 2023
$6.1M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
NYU-UG Research Integrity Training ProgramR25TW010886 · FIC · UNIVERSITY OF GHANA · PI Amos Laar, OLUGBENGA G. OGEDEGBE · 2018 to 2026
$2.2M
Detecting elusive biologically significant structural differences with serial crystallographyR21GM129570 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SOARES, ALEXEI SUAREZ · 2018 to 2019
$410k
National Institutes of Health, National Institute of General Medical Sciences P41GM103473National Institutes of Health, National Institute of General Medical Sciences P41GM111244National Institutes of Health, National Institute of General Medical Sciences R01GM117126National Institutes of Health, Reseach Resources P41RR012408NIGMS NIH HHS R01 GM117126NIGMS NIH HHS R21 GM129570US Department of Energy Offices of Basic Energy Sciences E-SC0012704US Department of Energy Offices of Biological and Environmental Research DE-AC02-98CH10886
6 · The paper itself

Abstract

Algorithms for quantifying the differences between two lattices are used for Bravais lattice determination, database lookup for unit cells to select candidates for molecular replacement, and recently for clustering to group together images from serial crystallography. It is particularly desirable for the differences between lattices to be computed as a perturbation-stable metric, i.e. as distances that satisfy the triangle inequality, so that standard tree-based nearest-neighbor algorithms can be used, and for which small changes in the lattices involved produce small changes in the distances computed. A perturbation-stable metric space related to the reduction algorithm of Selling and to the Bravais lattice determination methods of Delone is described. Two ways of representing the space, as six-dimensional real vectors or equivalently as three-dimensional complex vectors, are presented and applications of these metrics are discussed. (Note: in his later publications, Boris Delaunay used the Russian version of his surname, Delone.).

Indexed as

clusteringDelaunayDeloneNiggliSellingunit-cell reduction

Identifiers

PMID31041913
PMCPMC6492488

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.